TY - JOUR T1 - Phylogenetic classification and generic delineation of Calyptosphaeria gen. nov., Lentomitella, Spadicoides and Torrentispora (Sordariomycetes) JF - Studies in Mycology Y1 - 2018 DO - 10.1016/j.simyco.2017.11.004 A1 - Réblová, M. A1 - Miller, A.N. A1 - Réblová, K. A1 - Stepánek, V. SP - 1 EP - 62 AB -

The genus Ceratostomella has a long history of taxonomic confusion. While species with evanescent asci have been transferred to the Microascales and Ophiostomatales, the taxonomic status of species with persistent asci has not been completely resolved. In previous studies using DNA sequence data, cultures and morphology, several Ceratostomella spp. were allocated in 13 genera in the Eurotiomycetes and Sordariomycetes. In our study, the systematics of the remaining Ceratostomella spp. with persistent asci is revisited with new collection data, cultures and phylogeny based on novel DNA sequences from six nuclear loci. Bayesian inference and Maximum Likelihood analyses support the monophyly of several wood-inhabiting species formerly classified in Ceratostomella and other unknown morphologically similar taxa and their division into four genera, i.e. Lentomitella, Spadicoides, Torrentispora and the newly described Calyptosphaeria. This robust clade represents the order Xenospadicoidales in the Sordariomycetidae. Comparative analysis of the ITS2 secondary structure revealed a genetic variation among Lentomitella isolates; 11 species were recognised, of which five are newly introduced and two are new combinations. Other taxonomic novelties include four new species and eight new combinations in Calyptosphaeria, Spadicoides, and Torrentispora. Molecular data suggest that Spadicoides is polyphyletic. The core of the genus is positioned in the Xenospadicoidales; Spadicoides s. str. is experimentally linked with sexual morphs for the first time. Based on DNA sequence data, the monotypic genera Xenospadicoides and Pseudodiplococcium are reduced to synonymy under Spadicoides, while Fusoidispora and Pseudoannulatascus are synonymised with Torrentispora. Members of the Xenospadicoidales inhabit decaying wood in terrestrial and freshwater environments and share a few morphological characters such as the absence of stromatic tissue, ascomata with a cylindrical or rostrate neck, similar anatomies of the ascomatal walls, thin-walled unitunicate asci with a non-amyloid apical annulus, disintegrating paraphyses, usually ellipsoidal to fusiform ascospores and holoblastic-denticulate or tretic conidiogenesis. Revised Ceratostomella spp. with persistent asci are listed and the taxonomic status of each species is re-evaluated based on revision of the holotype and other representative material, published details and available phylogenetic data.

VL - 89 UR - http://dx.doi.org/10.1016/j.simyco.2017.11.004 ER - TY - JOUR T1 - A molecular phylogenetic assessment of the genus Gyromitra in North America JF - Mycologia Y1 - 2013 DO - 10.3852/12-397 A1 - Methven, A.S. A1 - Zelski, S.E. A1 - Miller, A.N. SP - 1306 EP - 1314 VL - 105 UR - https://www.tandfonline.com/doi/pdf/10.3852/12-397 ER - TY - JOUR T1 - Phylogenetic placement of four genera within the Leotiomycetes (Ascomycota) JF - North American Fungi Y1 - 2011 DO - 10.2509/naf2011.006.009 A1 - Hustad, V. A1 - Miller, A.N. SP - 1 EP - 13 VL - 6 UR - http://openjournals.wsu.edu/index.php/pnwfungi/article/view/1100 IS - 9 ER - TY - JOUR T1 - Taxonomy and molecular phylogeny of Diatrypaceae (Ascomycota, Xylariales) species from the Brazilian semi-arid region, including four new species JF - Mycological Progress Y1 - 2016 DO - 10.1007/s11557-016-1194-8 A1 - de Almeida, D.A. Carneiro A1 - Gusmão, L.F. Pascholati A1 - Miller, A.N. SP - 15: 53 VL - 15 UR - http://link.springer.com/10.1007/s11557-016-1194-8 ER - TY - JOUR T1 - A class-wide phylogenetic assessment of Dothideomycetes JF - Studies in Mycology Y1 - 2009 DO - 10.3114/sim.2009.64.01 A1 - Schoch, C.L. A1 - Crous, P.W. A1 - Groenewald, J.Z. A1 - Boehm, E.W.A. A1 - Burgess, T.I. A1 - de Gruyter, J. A1 - de Hoog, G.S. A1 - Dixon, L.J. A1 - Grube, M. A1 - Gueidan, C. A1 - Harada, Y. A1 - Hatakeyama, S. A1 - Hirayama, K. A1 - Hosoya, T. A1 - Huhndorf, S.M. A1 - Hyde, K.D. A1 - Jones, E.B.G. A1 - Kohlmeyer, J. A1 - Kruys, Å. A1 - Li, Y.M. A1 - Lücking, R. A1 - Lumbsch, H.T. A1 - Marvanová, L. A1 - Mbatchou, J.S. A1 - McVay, A.H. A1 - Miller, A.N. A1 - Mugambi, G.K. A1 - Muggia, L. A1 - Nelsen, M.P. A1 - Nelson, P. A1 - Owensby, C.A. A1 - Phillips, A.J.L. A1 - Phongpaichit, S. A1 - Pointing, S.B. A1 - Pujade-Renaud, V. A1 - Raja, H.A. A1 - Plata, E. Rivas A1 - Robbertse, B. A1 - Ruibal, C. A1 - Sakayaroj, J. A1 - Sano, T. A1 - Selbmann, L. A1 - Shearer, C.A. A1 - Shirouzu, T. A1 - Slippers, B. A1 - Suetrong, S. A1 - Tanaka, K. A1 - Volkmann-Kohlmeyer, B. A1 - Wingfield, M.J. A1 - Wood, A.R. A1 - Woudenberg, J.H.C. A1 - Yonezawa, H. A1 - Zhang, Y. A1 - Spatafora, J.W. SP - 1 EP - 15 VL - 64 UR - http://linkinghub.elsevier.com/retrieve/pii/S0166061614600956 ER - TY - JOUR T1 - Coprophilous contributions to the phylogeny of Lasiosphaeriaceae and allied taxa within Sordariales (Ascomycota, Fungi) JF - Fungal Diversity Y1 - 2015 DO - 10.1007/s13225-014-0296-3 A1 - Kruys, Å. A1 - Huhndorf, S.M. A1 - Miller, A.N. SP - 101 EP - 113 VL - 70 UR - http://link.springer.com/10.1007/s13225-014-0296-3 ER - TY - JOUR T1 - Generic circumscriptions in Geoglossomycetes JF - Persoonia Y1 - 2013 DO - 10.3767/003158513X671235 A1 - Hustad, V.P. A1 - Miller, A.N. A1 - Dentinger, B.T.M. A1 - Cannon, P.F. SP - 101 EP - 111 VL - 31 UR - http://openurl.ingenta.com/content/xref?genre=article&issn=0031-5850&volume=31&issue=1&spage=101 ER - TY - JOUR T1 - Amplistroma gen. nov. and its relation to Wallrothiella, two genera with globose ascospores and acrodontium-like anamorphs JF - Mycologia Y1 - 2009 DO - 10.3852/08-213 A1 - Huhndorf, S.M. A1 - Miller, A.N. A1 - Greif, M. A1 - Samuels, G.J. SP - 904 EP - 919 VL - 101 UR - http://www.mycologia.org/cgi/doi/10.3852/08-213 ER - TY - JOUR T1 - Geoglossum simile of North America and Europe: distribution of a widespread earth tongue species and designation of an epitype JF - Mycological Progress Y1 - 2014 DO - 10.1007/s11557-014-0969-z A1 - Hustad, V.P. A1 - Kučera, V. A1 - Rybáriková, N. A1 - Lizoň, P. A1 - Gaisler, J. A1 - Baroni, T.J. A1 - Miller, A.N. SP - 857 EP - 866 VL - 13 UR - http://link.springer.com/10.1007/s11557-014-0969-z ER - TY - JOUR T1 - Three new species of Acanthostigma (Tubeufiaceae, Dothideomycetes) from Great Smoky Mountains National Park JF - Mycologia Y1 - 2010 DO - 10.3852/09-051 A1 - Promputtha, I. A1 - Miller, A.N. SP - 574 EP - 587 VL - 102 UR - http://www.mycologia.org/cgi/doi/10.3852/09-051 JO - Mycologia ER - TY - JOUR T1 - Molecular systematics of the Coronophorales and new species of Bertia, Lasiobertia and Nitschkia JF - Mycological Research Y1 - 2004 DO - 10.1017/S0953756204001273 A1 - Huhndorf, S.M. A1 - Miller, A.N. A1 - Fernández, F.A. SP - 1384 EP - 1398 VL - 108 UR - http://linkinghub.elsevier.com/retrieve/pii/S0953756208604736 JO - Mycological Research ER - TY - JOUR T1 - Phylogenetic relationships of five uncommon species of Lasiosphaeria and three new species in the Helminthosphaeriaceae (Sordariomycetes) JF - Mycologia Y1 - 2014 DO - 10.3852/13-223 A1 - Miller, A.N. A1 - Huhndorf, S.M. A1 - Fournier, J. SP - 505 EP - 524 VL - 106 UR - http://www.mycologia.org/cgi/doi/10.3852/13-223 JO - Mycologia ER - TY - JOUR T1 - A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species JF - Studies in Mycology Y1 - 2009 DO - 10.3114/sim.2009.64.03 A1 - Boehm, E.W.A. A1 - Mugambi, G.K. A1 - Miller, A.N. A1 - Huhndorf, S.M. A1 - Marincowitz, S. A1 - Spatafora, J.W. A1 - Schoch, C.L. SP - 49 EP - 83 VL - 64 IS - 1 JO - Studies in Mycology ER - TY - JOUR T1 - Systematics of the genus Chaetosphaeria and its allied genera: morphological and phylogenetic diversity in north temperate and neotropical taxa JF - Mycologia Y1 - 2006 DO - 10.3852/mycologia.98.1.121 A1 - Fernández, F.A. A1 - Miller, A.N. A1 - Huhndorf, S.M. A1 - Lutzoni, F.M. A1 - Zoller, S. SP - 121 EP - 130 VL - 98 ER - TY - JOUR T1 - Molecular systematics of the Coronophorales and new species of Bertia, Lasiobertia and Nitschkia JF - Mycological Research Y1 - 2004 A1 - Huhndorf, S.M. A1 - Miller, A.N. A1 - Fernández, F.A. SP - 1384 EP - 1398 VL - 108 ER - TY - JOUR T1 - A re-evaluation of genus Chaetomidium based on molecular and morphological characters JF - Mycologia Y1 - 2009 DO - 10.3852/08-200 A1 - Greif, M.D. A1 - Stchigel, A.M. A1 - Miller, A.N. A1 - Huhndorf, S.M. SP - 554 EP - 564 VL - 101 ER - TY - JOUR T1 - Two new genera in the Magnaporthaceae, a new addition to Ceratosphaeria and two new species of Lentomitella JF - Mycologia Y1 - 2008 DO - 10.3852/08-037 A1 - Huhndorf, S.M. A1 - Greif, M. A1 - Mugambi, G.K. A1 - Miller, A.N. SP - 940 EP - 955 VL - 100 ER - TY - JOUR T1 - Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi) JF - Molecular Phylogenetics and Evolution Y1 - 2005 A1 - Miller, A.N. A1 - Huhndorf, S.M. SP - 60 EP - 75 VL - 35 ER - TY - JOUR T1 - Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined JF - Mycologia Y1 - 2004 A1 - Huhndorf, S.M. A1 - Miller, A.N. A1 - Fernández, F.A. SP - 368 EP - 387 VL - 96 ER - TY - JOUR T1 - A class-wide phylogenetic assessment of Dothideomycetes JF - Studies in Mycology Y1 - 2009 DO - 10.3114/sim.2009.64.01 A1 - Schoch, C.L. A1 - Crous, P.W. A1 - Groenewald, J.Z. A1 - Boehm, E.W.A. A1 - Burgess, T.I. A1 - de Gruyter, J. A1 - de Hoog, G.S. A1 - Dixon, L.J. A1 - Grube, M. A1 - Gueidan, C. A1 - Harada, Y. A1 - Hatakeyama, S. A1 - Hirayama, K. A1 - Hosoya, T. A1 - Huhndorf, S.M. A1 - Hyde, K.D. A1 - Jones, E.B.G. A1 - Kohlmeyer, J. A1 - Kruys, Å. A1 - Li, Y.M. A1 - Lücking, R. A1 - Lumbsch, H.T. A1 - Marvanová, L. A1 - Mbatchou, J.S. A1 - McVay, A.H. A1 - Miller, A.N. A1 - Mugambi, G.K. A1 - Muggia, L. A1 - Nelsen, M.P. A1 - Nelson, P. A1 - Owensby, C.A. A1 - Philips, A.J.L. A1 - Phongpaichit, S. A1 - Pointing, S.B. A1 - Pujade-Renaud, V. A1 - Raja, H.A. A1 - Rivas Plata, E. A1 - Robbertse, B. A1 - Ruibal, C. A1 - Sakayaroj, J. A1 - Sano, T. A1 - Selbmann, L. A1 - Shearer, C.A. A1 - Shirouzu, T. A1 - Slippers, B. A1 - Suetrong, S. A1 - Tanaka, K. A1 - Volkmann-Kohlmeyer, B. A1 - Wingfield, M.J. A1 - Wood, A.R. A1 - Woudenberg, J.H.C. A1 - Yonezawa, H. A1 - Zhang, Y. A1 - Spatafora, J.W. SP - 1 EP - 15 VL - 64 ER -