TY - JOUR
T1 - Phylogenetic classification and generic delineation of Calyptosphaeria gen. nov., Lentomitella, Spadicoides and Torrentispora (Sordariomycetes)
JF - Studies in Mycology
Y1 - 2018
DO - 10.1016/j.simyco.2017.11.004
A1 - Réblová, M.
A1 - Miller, A.N.
A1 - Réblová, K.
A1 - Stepánek, V.
SP - 1
EP - 62
AB -
The genus Ceratostomella has a long history of taxonomic confusion. While species with evanescent asci have been transferred to the Microascales and Ophiostomatales, the taxonomic status of species with persistent asci has not been completely resolved. In previous studies using DNA sequence data, cultures and morphology, several Ceratostomella spp. were allocated in 13 genera in the Eurotiomycetes and Sordariomycetes. In our study, the systematics of the remaining Ceratostomella spp. with persistent asci is revisited with new collection data, cultures and phylogeny based on novel DNA sequences from six nuclear loci. Bayesian inference and Maximum Likelihood analyses support the monophyly of several wood-inhabiting species formerly classified in Ceratostomella and other unknown morphologically similar taxa and their division into four genera, i.e. Lentomitella, Spadicoides, Torrentispora and the newly described Calyptosphaeria. This robust clade represents the order Xenospadicoidales in the Sordariomycetidae. Comparative analysis of the ITS2 secondary structure revealed a genetic variation among Lentomitella isolates; 11 species were recognised, of which five are newly introduced and two are new combinations. Other taxonomic novelties include four new species and eight new combinations in Calyptosphaeria, Spadicoides, and Torrentispora. Molecular data suggest that Spadicoides is polyphyletic. The core of the genus is positioned in the Xenospadicoidales; Spadicoides s. str. is experimentally linked with sexual morphs for the first time. Based on DNA sequence data, the monotypic genera Xenospadicoides and Pseudodiplococcium are reduced to synonymy under Spadicoides, while Fusoidispora and Pseudoannulatascus are synonymised with Torrentispora. Members of the Xenospadicoidales inhabit decaying wood in terrestrial and freshwater environments and share a few morphological characters such as the absence of stromatic tissue, ascomata with a cylindrical or rostrate neck, similar anatomies of the ascomatal walls, thin-walled unitunicate asci with a non-amyloid apical annulus, disintegrating paraphyses, usually ellipsoidal to fusiform ascospores and holoblastic-denticulate or tretic conidiogenesis. Revised Ceratostomella spp. with persistent asci are listed and the taxonomic status of each species is re-evaluated based on revision of the holotype and other representative material, published details and available phylogenetic data.
VL - 89
UR - http://dx.doi.org/10.1016/j.simyco.2017.11.004
ER -
TY - JOUR
T1 - A molecular phylogenetic assessment of the genus Gyromitra in North America
JF - Mycologia
Y1 - 2013
DO - 10.3852/12-397
A1 - Methven, A.S.
A1 - Zelski, S.E.
A1 - Miller, A.N.
SP - 1306
EP - 1314
VL - 105
UR - https://www.tandfonline.com/doi/pdf/10.3852/12-397
ER -
TY - JOUR
T1 - Phylogenetic placement of four genera within the Leotiomycetes (Ascomycota)
JF - North American Fungi
Y1 - 2011
DO - 10.2509/naf2011.006.009
A1 - Hustad, V.
A1 - Miller, A.N.
SP - 1
EP - 13
VL - 6
UR - http://openjournals.wsu.edu/index.php/pnwfungi/article/view/1100
IS - 9
ER -
TY - JOUR
T1 - Taxonomy and molecular phylogeny of Diatrypaceae (Ascomycota, Xylariales) species from the Brazilian semi-arid region, including four new species
JF - Mycological Progress
Y1 - 2016
DO - 10.1007/s11557-016-1194-8
A1 - de Almeida, D.A. Carneiro
A1 - Gusmão, L.F. Pascholati
A1 - Miller, A.N.
SP - 15: 53
VL - 15
UR - http://link.springer.com/10.1007/s11557-016-1194-8
ER -
TY - JOUR
T1 - A class-wide phylogenetic assessment of Dothideomycetes
JF - Studies in Mycology
Y1 - 2009
DO - 10.3114/sim.2009.64.01
A1 - Schoch, C.L.
A1 - Crous, P.W.
A1 - Groenewald, J.Z.
A1 - Boehm, E.W.A.
A1 - Burgess, T.I.
A1 - de Gruyter, J.
A1 - de Hoog, G.S.
A1 - Dixon, L.J.
A1 - Grube, M.
A1 - Gueidan, C.
A1 - Harada, Y.
A1 - Hatakeyama, S.
A1 - Hirayama, K.
A1 - Hosoya, T.
A1 - Huhndorf, S.M.
A1 - Hyde, K.D.
A1 - Jones, E.B.G.
A1 - Kohlmeyer, J.
A1 - Kruys, Å.
A1 - Li, Y.M.
A1 - Lücking, R.
A1 - Lumbsch, H.T.
A1 - Marvanová, L.
A1 - Mbatchou, J.S.
A1 - McVay, A.H.
A1 - Miller, A.N.
A1 - Mugambi, G.K.
A1 - Muggia, L.
A1 - Nelsen, M.P.
A1 - Nelson, P.
A1 - Owensby, C.A.
A1 - Phillips, A.J.L.
A1 - Phongpaichit, S.
A1 - Pointing, S.B.
A1 - Pujade-Renaud, V.
A1 - Raja, H.A.
A1 - Plata, E. Rivas
A1 - Robbertse, B.
A1 - Ruibal, C.
A1 - Sakayaroj, J.
A1 - Sano, T.
A1 - Selbmann, L.
A1 - Shearer, C.A.
A1 - Shirouzu, T.
A1 - Slippers, B.
A1 - Suetrong, S.
A1 - Tanaka, K.
A1 - Volkmann-Kohlmeyer, B.
A1 - Wingfield, M.J.
A1 - Wood, A.R.
A1 - Woudenberg, J.H.C.
A1 - Yonezawa, H.
A1 - Zhang, Y.
A1 - Spatafora, J.W.
SP - 1
EP - 15
VL - 64
UR - http://linkinghub.elsevier.com/retrieve/pii/S0166061614600956
ER -
TY - JOUR
T1 - Coprophilous contributions to the phylogeny of Lasiosphaeriaceae and allied taxa within Sordariales (Ascomycota, Fungi)
JF - Fungal Diversity
Y1 - 2015
DO - 10.1007/s13225-014-0296-3
A1 - Kruys, Å.
A1 - Huhndorf, S.M.
A1 - Miller, A.N.
SP - 101
EP - 113
VL - 70
UR - http://link.springer.com/10.1007/s13225-014-0296-3
ER -
TY - JOUR
T1 - Generic circumscriptions in Geoglossomycetes
JF - Persoonia
Y1 - 2013
DO - 10.3767/003158513X671235
A1 - Hustad, V.P.
A1 - Miller, A.N.
A1 - Dentinger, B.T.M.
A1 - Cannon, P.F.
SP - 101
EP - 111
VL - 31
UR - http://openurl.ingenta.com/content/xref?genre=article&issn=0031-5850&volume=31&issue=1&spage=101
ER -
TY - JOUR
T1 - Amplistroma gen. nov. and its relation to Wallrothiella, two genera with globose ascospores and acrodontium-like anamorphs
JF - Mycologia
Y1 - 2009
DO - 10.3852/08-213
A1 - Huhndorf, S.M.
A1 - Miller, A.N.
A1 - Greif, M.
A1 - Samuels, G.J.
SP - 904
EP - 919
VL - 101
UR - http://www.mycologia.org/cgi/doi/10.3852/08-213
ER -
TY - JOUR
T1 - Geoglossum simile of North America and Europe: distribution of a widespread earth tongue species and designation of an epitype
JF - Mycological Progress
Y1 - 2014
DO - 10.1007/s11557-014-0969-z
A1 - Hustad, V.P.
A1 - Kučera, V.
A1 - Rybáriková, N.
A1 - Lizoň, P.
A1 - Gaisler, J.
A1 - Baroni, T.J.
A1 - Miller, A.N.
SP - 857
EP - 866
VL - 13
UR - http://link.springer.com/10.1007/s11557-014-0969-z
ER -
TY - JOUR
T1 - Three new species of Acanthostigma (Tubeufiaceae, Dothideomycetes) from Great Smoky Mountains National Park
JF - Mycologia
Y1 - 2010
DO - 10.3852/09-051
A1 - Promputtha, I.
A1 - Miller, A.N.
SP - 574
EP - 587
VL - 102
UR - http://www.mycologia.org/cgi/doi/10.3852/09-051
JO - Mycologia
ER -
TY - JOUR
T1 - Molecular systematics of the Coronophorales and new species of Bertia, Lasiobertia and Nitschkia
JF - Mycological Research
Y1 - 2004
DO - 10.1017/S0953756204001273
A1 - Huhndorf, S.M.
A1 - Miller, A.N.
A1 - Fernández, F.A.
SP - 1384
EP - 1398
VL - 108
UR - http://linkinghub.elsevier.com/retrieve/pii/S0953756208604736
JO - Mycological Research
ER -
TY - JOUR
T1 - Phylogenetic relationships of five uncommon species of Lasiosphaeria and three new species in the Helminthosphaeriaceae (Sordariomycetes)
JF - Mycologia
Y1 - 2014
DO - 10.3852/13-223
A1 - Miller, A.N.
A1 - Huhndorf, S.M.
A1 - Fournier, J.
SP - 505
EP - 524
VL - 106
UR - http://www.mycologia.org/cgi/doi/10.3852/13-223
JO - Mycologia
ER -
TY - JOUR
T1 - A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species
JF - Studies in Mycology
Y1 - 2009
DO - 10.3114/sim.2009.64.03
A1 - Boehm, E.W.A.
A1 - Mugambi, G.K.
A1 - Miller, A.N.
A1 - Huhndorf, S.M.
A1 - Marincowitz, S.
A1 - Spatafora, J.W.
A1 - Schoch, C.L.
SP - 49
EP - 83
VL - 64
IS - 1
JO - Studies in Mycology
ER -
TY - JOUR
T1 - Systematics of the genus Chaetosphaeria and its allied genera: morphological and phylogenetic diversity in north temperate and neotropical taxa
JF - Mycologia
Y1 - 2006
DO - 10.3852/mycologia.98.1.121
A1 - Fernández, F.A.
A1 - Miller, A.N.
A1 - Huhndorf, S.M.
A1 - Lutzoni, F.M.
A1 - Zoller, S.
SP - 121
EP - 130
VL - 98
ER -
TY - JOUR
T1 - Molecular systematics of the Coronophorales and new species of Bertia, Lasiobertia and Nitschkia
JF - Mycological Research
Y1 - 2004
A1 - Huhndorf, S.M.
A1 - Miller, A.N.
A1 - Fernández, F.A.
SP - 1384
EP - 1398
VL - 108
ER -
TY - JOUR
T1 - A re-evaluation of genus Chaetomidium based on molecular and morphological characters
JF - Mycologia
Y1 - 2009
DO - 10.3852/08-200
A1 - Greif, M.D.
A1 - Stchigel, A.M.
A1 - Miller, A.N.
A1 - Huhndorf, S.M.
SP - 554
EP - 564
VL - 101
ER -
TY - JOUR
T1 - Two new genera in the Magnaporthaceae, a new addition to Ceratosphaeria and two new species of Lentomitella
JF - Mycologia
Y1 - 2008
DO - 10.3852/08-037
A1 - Huhndorf, S.M.
A1 - Greif, M.
A1 - Mugambi, G.K.
A1 - Miller, A.N.
SP - 940
EP - 955
VL - 100
ER -
TY - JOUR
T1 - Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi)
JF - Molecular Phylogenetics and Evolution
Y1 - 2005
A1 - Miller, A.N.
A1 - Huhndorf, S.M.
SP - 60
EP - 75
VL - 35
ER -
TY - JOUR
T1 - Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined
JF - Mycologia
Y1 - 2004
A1 - Huhndorf, S.M.
A1 - Miller, A.N.
A1 - Fernández, F.A.
SP - 368
EP - 387
VL - 96
ER -
TY - JOUR
T1 - A class-wide phylogenetic assessment of Dothideomycetes
JF - Studies in Mycology
Y1 - 2009
DO - 10.3114/sim.2009.64.01
A1 - Schoch, C.L.
A1 - Crous, P.W.
A1 - Groenewald, J.Z.
A1 - Boehm, E.W.A.
A1 - Burgess, T.I.
A1 - de Gruyter, J.
A1 - de Hoog, G.S.
A1 - Dixon, L.J.
A1 - Grube, M.
A1 - Gueidan, C.
A1 - Harada, Y.
A1 - Hatakeyama, S.
A1 - Hirayama, K.
A1 - Hosoya, T.
A1 - Huhndorf, S.M.
A1 - Hyde, K.D.
A1 - Jones, E.B.G.
A1 - Kohlmeyer, J.
A1 - Kruys, Å.
A1 - Li, Y.M.
A1 - Lücking, R.
A1 - Lumbsch, H.T.
A1 - Marvanová, L.
A1 - Mbatchou, J.S.
A1 - McVay, A.H.
A1 - Miller, A.N.
A1 - Mugambi, G.K.
A1 - Muggia, L.
A1 - Nelsen, M.P.
A1 - Nelson, P.
A1 - Owensby, C.A.
A1 - Philips, A.J.L.
A1 - Phongpaichit, S.
A1 - Pointing, S.B.
A1 - Pujade-Renaud, V.
A1 - Raja, H.A.
A1 - Rivas Plata, E.
A1 - Robbertse, B.
A1 - Ruibal, C.
A1 - Sakayaroj, J.
A1 - Sano, T.
A1 - Selbmann, L.
A1 - Shearer, C.A.
A1 - Shirouzu, T.
A1 - Slippers, B.
A1 - Suetrong, S.
A1 - Tanaka, K.
A1 - Volkmann-Kohlmeyer, B.
A1 - Wingfield, M.J.
A1 - Wood, A.R.
A1 - Woudenberg, J.H.C.
A1 - Yonezawa, H.
A1 - Zhang, Y.
A1 - Spatafora, J.W.
SP - 1
EP - 15
VL - 64
ER -