TY - JOUR T1 - Evolution of non-lichenized, saprotrophic species of Arthonia (Ascomycota, Arthoniales) and resurrection of Naevia, with notes on Mycoporum JF - Fungal Diversity Y1 - 2020 DO - 10.1007/s13225-020-00451-9 A1 - Thiyagaraja, V. A1 - Lücking, R. A1 - Ertz, D. A1 - Wanasinghe, D.N. A1 - Karunarathna, S.C. A1 - Camporesi, E. A1 - Hyde, K.D. SP - 205 EP - 224 VL - 102 UR - http://dx.doi.org/10.1007/s13225-020-00451-9 ER - TY - JOUR T1 - Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence JF - Taxon Y1 - 2010 A1 - Crespo, A. A1 - Kauff, F. A1 - Divakar, P.K. A1 - del Prado, R. A1 - Pérez-Ortega, S. A1 - Amo de Paz, G. A1 - Ferencova, Z. A1 - Blanco, O. A1 - Roca-Valiente, B. A1 - Núñez-Zapata, J. A1 - Cubas, P. A1 - Argüello, A. A1 - Elix, J.A. A1 - Esslinger, T.L. A1 - Hawksworth, D.L. A1 - Millanes, A.M. A1 - Molina, M. Carmen A1 - Wedin, M. A1 - Ahti, T. A1 - Aptroot, A. A1 - Barreno, E. A1 - Bungartz, F. A1 - Calvelo, S. A1 - Candan, M. A1 - Cole, M. A1 - Ertz, D. A1 - Goffinet, B. A1 - Lindblom, L. A1 - Lücking, R. A1 - Lutzoni, F. A1 - Mattsson, J.-E. A1 - Messuti, M.I. A1 - Miadlikowska, J. A1 - Piercey-Normore, M.D. A1 - Rico, V.J. A1 - Sipman, H.J.M. A1 - Schmitt, I. A1 - Spribille, T. A1 - Thell, A. A1 - Thor, G. A1 - Upreti, D. A1 - Lumbsch, H.T. SP - 1735 EP - 1753 VL - 59 UR - http://www.jstor.org/stable/41059870 ER - TY - JOUR T1 - A first assessment of the Ticolichen biodiversity inventory in Costa Rica: the genus Coenogonium (Ostropales: Coenogoniaceae), with a world-wide key and checklist and a phenotype based cladistic analysis JF - Fungal Diversity Y1 - 2006 A1 - Rivas Plata, E. A1 - Lücking, R. A1 - Aptroot, A. A1 - Sipman, H.J.M. A1 - Chaves, J.L. A1 - Umaña, L. A1 - Lizano, D. SP - 255 EP - 321 VL - 23 UR - www.fungaldiversity.org/fdp/sfdp/23-13.pdf ER - TY - JOUR T1 - Phylogenetic classification at generic level in the absence of distinct phylogenetic patterns of phenotypical variation: a case study in Graphidaceae (Ascomycota) JF - PLoS ONE Y1 - 2012 DO - 10.1371/journal.pone.0051392 A1 - Parnmen, S. A1 - Lücking, R. A1 - Lumbsch, H.T. ED - O’Grady, P. SP - e51392 VL - 7 UR - http://dx.plos.org/10.1371/journal.pone.0051392 IS - 12 ER - TY - JOUR T1 - Major clades and phylogenetic relationships between lichenized and non-lichenized lineages in Ostropales (Ascomycota: Lecanoromycetes) JF - Taxon Y1 - 2010 A1 - Baloch, E. A1 - Lücking, R. A1 - Lumbsch, H.T. A1 - Wedin, M. SP - 1483 EP - 1494 VL - 59 UR - http://www.jstor.org/stable/20774043 ER - TY - JOUR T1 - The phylogenetic placement of Ostropales within Lecanoromycetes (Ascomycota) revisited JF - Mycological Research Y1 - 2007 DO - 10.1016/j.mycres.2007.01.006 A1 - Lumbsch, H.T. A1 - Schmitt, I. A1 - Lücking, R. A1 - Wiklund, E. A1 - Wedin, M. SP - 257 EP - 267 KW - Ascomycota KW - Fungal Proteins KW - Genes, Fungal KW - Phylogeny KW - Species Specificity AB -

Results of molecular studies regarding the phylogenetic placement of the order Ostropales and related taxa within Lecanoromycetes were thus far inconclusive. Some analyses placed the order as sister to the rest of Lecanoromycetes, while others inferred a position nested within Lecanoromycetes. We assembled a data set of 101 species including sequences from nuLSU rDNA, mtSSU rDNA, and the nuclear protein-coding RPB1 for each species to examine the cause of incongruencies in previously published phylogenies. MP, minimum evolution, and Bayesian analyses were performed using the combined three-region data set and the single-gene data sets. The position of Ostropales nested in Lecanoromycetes is confirmed in all single-gene and concatenated analyses, and a placement as sister to the rest of Lecanoromycetes is significantly rejected using two independent methods of alternative topology testing. Acarosporales and related taxa (Acarosporaceae group) are basal in Lecanoromycetes. However, if the these basal taxa are excluded from the analyses, Ostropales appear to be sister to the rest of Lecanoromycetes, suggesting different ingroup rooting as the cause for deviating topologies in previously published phylogenies.

VL - 111 ER - TY - JOUR T1 - A class-wide phylogenetic assessment of Dothideomycetes JF - Studies in Mycology Y1 - 2009 DO - 10.3114/sim.2009.64.01 A1 - Schoch, C.L. A1 - Crous, P.W. A1 - Groenewald, J.Z. A1 - Boehm, E.W.A. A1 - Burgess, T.I. A1 - de Gruyter, J. A1 - de Hoog, G.S. A1 - Dixon, L.J. A1 - Grube, M. A1 - Gueidan, C. A1 - Harada, Y. A1 - Hatakeyama, S. A1 - Hirayama, K. A1 - Hosoya, T. A1 - Huhndorf, S.M. A1 - Hyde, K.D. A1 - Jones, E.B.G. A1 - Kohlmeyer, J. A1 - Kruys, Å. A1 - Li, Y.M. A1 - Lücking, R. A1 - Lumbsch, H.T. A1 - Marvanová, L. A1 - Mbatchou, J.S. A1 - McVay, A.H. A1 - Miller, A.N. A1 - Mugambi, G.K. A1 - Muggia, L. A1 - Nelsen, M.P. A1 - Nelson, P. A1 - Owensby, C.A. A1 - Phillips, A.J.L. A1 - Phongpaichit, S. A1 - Pointing, S.B. A1 - Pujade-Renaud, V. A1 - Raja, H.A. A1 - Plata, E. Rivas A1 - Robbertse, B. A1 - Ruibal, C. A1 - Sakayaroj, J. A1 - Sano, T. A1 - Selbmann, L. A1 - Shearer, C.A. A1 - Shirouzu, T. A1 - Slippers, B. A1 - Suetrong, S. A1 - Tanaka, K. A1 - Volkmann-Kohlmeyer, B. A1 - Wingfield, M.J. A1 - Wood, A.R. A1 - Woudenberg, J.H.C. A1 - Yonezawa, H. A1 - Zhang, Y. A1 - Spatafora, J.W. SP - 1 EP - 15 VL - 64 UR - http://linkinghub.elsevier.com/retrieve/pii/S0166061614600956 ER - TY - JOUR T1 - Unravelling the phylogenetic relationships of lichenised fungi in Dothideomyceta JF - Studies in Mycology Y1 - 2009 DO - 10.3114/sim.2009.64.07 A1 - Nelsen, M.P. A1 - Lücking, R. A1 - Grube, M. A1 - Mbatchou, J.S. A1 - Muggia, L. A1 - Rivas Plata, E. A1 - Lumbsch, H.T. SP - 135 EP - 144 VL - 64 UR - http://linkinghub.elsevier.com/retrieve/pii/S0166061614601019 ER - TY - JOUR T1 - Phylloblastia inexpectata (Verrucariaceae), a new species of foliicolous lichen from Western Europe and Madeira JF - Lichenologist Y1 - 2007 DO - 10.1017/S0024282907006500 A1 - Sérusiaux, E. A1 - Coppins, B.J. A1 - Lücking, R. SP - 103 EP - 108 VL - 39 UR - http://www.journals.cambridge.org/abstract_S0024282907006500 ER - TY - JOUR T1 - Phylogeny of the Lobariaceae (lichenized Ascomycota: Peltigerales), with a reappraisal of the genus Lobariella JF - Lichenologist Y1 - 2013 DO - 10.1017/S0024282912000825 A1 - Moncada, B. A1 - Lücking, R. A1 - Betancourt-Macuase, L. SP - 203 EP - 263 VL - 45 UR - http://www.journals.cambridge.org/abstract_S0024282912000825 ER - TY - JOUR T1 - A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families JF - Molecular Phylogenetics and Evolution Y1 - 2014 DO - 10.1016/j.ympev.2014.04.003 A1 - Miadlikowska, J. A1 - Kauff, F. A1 - Högnabba, F. A1 - Oliver, J.C. A1 - Molnar, K. A1 - Fraker, E. A1 - Gaya, E. A1 - Hafellner, J. A1 - Hofstetter, V. A1 - Gueidan, C. A1 - Otálora, M.A.G. A1 - Hodkinson, B. A1 - Kukwa, M. A1 - Lücking, R. A1 - Björk, C. A1 - Sipman, H.J.M. A1 - Burgaz, A.R. A1 - Thell, A. A1 - Passo, A. A1 - Myllys, L. A1 - Goward, T. A1 - Fernández-Brime, S. A1 - Hestmark, G. A1 - Lendemer, J. A1 - Lumbsch, H.T. A1 - Schmull, M. A1 - Schoch, C.L. A1 - Sérusiaux, E. A1 - Maddison, D.R. A1 - Arnold, A. E. A1 - Lutzoni, F. A1 - Stenroos, S. SP - 132 EP - 168 VL - 79 UR - http://linkinghub.elsevier.com/retrieve/pii/S1055790314001298 ER - TY - JOUR T1 - Phylogenetic patterns of morphological and chemical characters and reproductive mode in the Heterodermia obscurata group in Costa Rica (Ascomycota, Physciaceae) JF - Systematics and Biodiversity Y1 - 2008 DO - 10.1017/S1477200007002629 A1 - Lücking, R. A1 - del Prado, R. A1 - Lumbsch, H.T. A1 - Will‐Wolf, S. A1 - Aptroot, A. A1 - Sipman, H.J.M. A1 - Umaña, L. A1 - Chaves, J.L. SP - 31 EP - 41 VL - 6 UR - http://www.tandfonline.com/doi/abs/10.1017/S1477200007002629 ER - TY - JOUR T1 - Implementing a cumulative supermatrix approach for a comprehensive phylogenetic study of the Teloschistales (Pezizomycotina, Ascomycota) JF - Molecular Phylogenetics and Evolution Y1 - 2012 DO - 10.1016/j.ympev.2012.01.012 A1 - Gaya, E. A1 - Högnabba, F. A1 - Holguin, Á. A1 - Molnar, K. A1 - Fernández-Brime, S. A1 - Stenroos, S. A1 - Arup, U. A1 - Søchting, U. A1 - Boom, P. van den A1 - Lücking, R. A1 - Sipman, H.J.M. A1 - Lutzoni, F. SP - 374 EP - 387 VL - 63 UR - http://linkinghub.elsevier.com/retrieve/pii/S1055790312000292 ER - TY - JOUR T1 - Molecular phylogeny, morphology, pigment chemistry and ecology in Hygrophoraceae (Agaricales) JF - Fungal Diversity Y1 - 2014 DO - 10.1007/s13225-013-0259-0 A1 - Lodge, D.J. A1 - Padamsee, M. A1 - Matheny, P.B. A1 - Aime, M.C. A1 - Cantrell, S.A. A1 - Boertmann, D. A1 - Kovalenko, A. A1 - Vizzini, A. A1 - Dentinger, B.T.M. A1 - Kirk, P.M. A1 - Ainsworth, A.M. A1 - Moncalvo, J.-M. A1 - Vilgalys, R. A1 - Larsson, E. A1 - Lücking, R. A1 - Griffith, G.W. A1 - Smith, M.E. A1 - Norvell, L.L. A1 - Desjardin, D.E. A1 - Redhead, S.A. A1 - Ovrebo, C.L. A1 - Lickey, E.B. A1 - Ercole, E. A1 - Hughes, K.W. A1 - Courtecuisse, R. A1 - Young, A. A1 - Binder, M. A1 - Minnis, A.M. A1 - Lindner, D.L. A1 - Ortiz-Santana, B. A1 - Haight, J. A1 - Læssøe, T. A1 - Baroni, T.J. A1 - Geml, J. A1 - Hattori, T. SP - 1 EP - 99 VL - 64 UR - http://link.springer.com/10.1007/s13225-013-0259-0 ER - TY - JOUR T1 - New combinations and names in Gyalecta for former Belonia and Pachyphiale (Ascomycota, Ostropales) species JF - Lichenologist Y1 - 2013 DO - 10.1017/S0024282913000492 A1 - Baloch, E. A1 - Lumbsch, H.T. A1 - Lücking, R. A1 - Wedin, M. SP - 723 EP - 727 VL - 45 UR - http://www.journals.cambridge.org/abstract_S0024282913000492 JO - Lichenologist ER - TY - JOUR T1 - Foliicolous lichens from Brazil (mainly Amazonia), including a checklist and notes on Coenogonium and Dimerella (Gyalectaceae) JF - Botanische Jahrbücher für Systematik, Pflanzengeschichte und Pflanzengeographie Y1 - 2000 A1 - Lücking, R. A1 - Kalb, K. SP - 1 EP - 61 VL - 122 ER - TY - JOUR T1 - A class-wide phylogenetic assessment of Dothideomycetes JF - Studies in Mycology Y1 - 2009 DO - 10.3114/sim.2009.64.01 A1 - Schoch, C.L. A1 - Crous, P.W. A1 - Groenewald, J.Z. A1 - Boehm, E.W.A. A1 - Burgess, T.I. A1 - de Gruyter, J. A1 - de Hoog, G.S. A1 - Dixon, L.J. A1 - Grube, M. A1 - Gueidan, C. A1 - Harada, Y. A1 - Hatakeyama, S. A1 - Hirayama, K. A1 - Hosoya, T. A1 - Huhndorf, S.M. A1 - Hyde, K.D. A1 - Jones, E.B.G. A1 - Kohlmeyer, J. A1 - Kruys, Å. A1 - Li, Y.M. A1 - Lücking, R. A1 - Lumbsch, H.T. A1 - Marvanová, L. A1 - Mbatchou, J.S. A1 - McVay, A.H. A1 - Miller, A.N. A1 - Mugambi, G.K. A1 - Muggia, L. A1 - Nelsen, M.P. A1 - Nelson, P. A1 - Owensby, C.A. A1 - Philips, A.J.L. A1 - Phongpaichit, S. A1 - Pointing, S.B. A1 - Pujade-Renaud, V. A1 - Raja, H.A. A1 - Rivas Plata, E. A1 - Robbertse, B. A1 - Ruibal, C. A1 - Sakayaroj, J. A1 - Sano, T. A1 - Selbmann, L. A1 - Shearer, C.A. A1 - Shirouzu, T. A1 - Slippers, B. A1 - Suetrong, S. A1 - Tanaka, K. A1 - Volkmann-Kohlmeyer, B. A1 - Wingfield, M.J. A1 - Wood, A.R. A1 - Woudenberg, J.H.C. A1 - Yonezawa, H. A1 - Zhang, Y. A1 - Spatafora, J.W. SP - 1 EP - 15 VL - 64 ER -