TY - JOUR T1 - Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence JF - Taxon Y1 - 2010 A1 - Crespo, A. A1 - Kauff, F. A1 - Divakar, P.K. A1 - del Prado, R. A1 - Pérez-Ortega, S. A1 - Amo de Paz, G. A1 - Ferencova, Z. A1 - Blanco, O. A1 - Roca-Valiente, B. A1 - Núñez-Zapata, J. A1 - Cubas, P. A1 - Argüello, A. A1 - Elix, J.A. A1 - Esslinger, T.L. A1 - Hawksworth, D.L. A1 - Millanes, A.M. A1 - Molina, M. Carmen A1 - Wedin, M. A1 - Ahti, T. A1 - Aptroot, A. A1 - Barreno, E. A1 - Bungartz, F. A1 - Calvelo, S. A1 - Candan, M. A1 - Cole, M. A1 - Ertz, D. A1 - Goffinet, B. A1 - Lindblom, L. A1 - Lücking, R. A1 - Lutzoni, F. A1 - Mattsson, J.-E. A1 - Messuti, M.I. A1 - Miadlikowska, J. A1 - Piercey-Normore, M.D. A1 - Rico, V.J. A1 - Sipman, H.J.M. A1 - Schmitt, I. A1 - Spribille, T. A1 - Thell, A. A1 - Thor, G. A1 - Upreti, D. A1 - Lumbsch, H.T. SP - 1735 EP - 1753 VL - 59 UR - http://www.jstor.org/stable/41059870 ER - TY - JOUR T1 - A new circumscription of the genus Varicellaria (Pertusariales, Ascomycota) JF - MycoKeys Y1 - 2012 DO - 10.3897/mycokeys.4.354510.3897/mycokeys.4.3545.figure110.3897/mycokeys.4.3545.figure2 A1 - Schmitt, I. A1 - Otte, J. A1 - Parnmen, S. A1 - Sadowska-Deś, A. A1 - Luecking, R. A1 - Lumbsch, T. SP - 23 EP - 36 VL - 4 UR - http://mycokeys.pensoft.net/articles.php?id=1187 ER - TY - JOUR T1 - The sister-group relationships of the largest family of lichenized fungi, Parmeliaceae (Lecanorales, Ascomycota) JF - Fungal Biology Y1 - 2013 DO - 10.1016/j.funbio.2013.08.001 A1 - Singh, G. A1 - Divakar, P.K. A1 - Dal Grande, F. A1 - Otte, J. A1 - Parnmen, S. A1 - Wedin, M. A1 - Crespo, A. A1 - Lumbsch, H.T. A1 - Schmitt, I. SP - 715 EP - 721 VL - 117 UR - http://linkinghub.elsevier.com/retrieve/pii/S1878614613001177 ER - TY - JOUR T1 - Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus Protoparmelia (Lecanorales, Ascomycota) JF - PLOS ONE Y1 - 2015 DO - 10.1371/journal.pone.0124625 A1 - Singh, G. A1 - Dal Grande, F. A1 - Divakar, P.K. A1 - Otte, J. A1 - Leavitt, S.D. A1 - Szczepanska, K. A1 - Crespo, A. A1 - Rico, V.J. A1 - Aptroot, A. A1 - Cáceres, M.E. da Silva A1 - Lumbsch, H.T. A1 - Schmitt, I. ED - Fontaneto, D. SP - e0124625 VL - 10 UR - http://dx.plos.org/10.1371/journal.pone.0124625 IS - 5 ER - TY - JOUR T1 - Circumscription of the genus Lepra, a recently resurrected genus to accommodate the “Variolaria”-group of Pertusaria sensu lato (Pertusariales, Ascomycota) JF - PLoS ONE Y1 - 2017 DO - 10.1371/journal.pone.018028410 A1 - Wei, X.-l. A1 - Schmitt, I. A1 - Hodkinson, B. A1 - Flakus, A. A1 - Kukwa, M. A1 - Divakar, P.K. A1 - Kirika, P.M. A1 - Otte, J. A1 - Meiser, A. A1 - Lumbsch, H.T. ED - Baruffini, E. SP - e0180284 VL - 12 UR - http://dx.plos.org/10.1371/journal.pone.0180284 IS - 7 ER - TY - JOUR T1 - Using a temporal phylogenetic method to harmonize family- and genus-level classification in the largest clade of lichen-forming fungi JF - Fungal Diversity Y1 - 2017 DO - 10.1007/s13225-017-0379-z A1 - Divakar, P.K. A1 - Crespo, A. A1 - Kraichak, E. A1 - Leavitt, S.D. A1 - Singh, G. A1 - Schmitt, I. A1 - Lumbsch, H.T. SP - 101 EP - 117 VL - 84 UR - http://link.springer.com/10.1007/s13225-017-0379-z ER - TY - JOUR T1 - The phylogenetic placement of Ostropales within Lecanoromycetes (Ascomycota) revisited JF - Mycological Research Y1 - 2007 DO - 10.1016/j.mycres.2007.01.006 A1 - Lumbsch, H.T. A1 - Schmitt, I. A1 - Lücking, R. A1 - Wiklund, E. A1 - Wedin, M. SP - 257 EP - 267 KW - Ascomycota KW - Fungal Proteins KW - Genes, Fungal KW - Phylogeny KW - Species Specificity AB -

Results of molecular studies regarding the phylogenetic placement of the order Ostropales and related taxa within Lecanoromycetes were thus far inconclusive. Some analyses placed the order as sister to the rest of Lecanoromycetes, while others inferred a position nested within Lecanoromycetes. We assembled a data set of 101 species including sequences from nuLSU rDNA, mtSSU rDNA, and the nuclear protein-coding RPB1 for each species to examine the cause of incongruencies in previously published phylogenies. MP, minimum evolution, and Bayesian analyses were performed using the combined three-region data set and the single-gene data sets. The position of Ostropales nested in Lecanoromycetes is confirmed in all single-gene and concatenated analyses, and a placement as sister to the rest of Lecanoromycetes is significantly rejected using two independent methods of alternative topology testing. Acarosporales and related taxa (Acarosporaceae group) are basal in Lecanoromycetes. However, if the these basal taxa are excluded from the analyses, Ostropales appear to be sister to the rest of Lecanoromycetes, suggesting different ingroup rooting as the cause for deviating topologies in previously published phylogenies.

VL - 111 ER - TY - JOUR T1 - Molecular phylogeny of the Pertusariaceae supports secondary chemistry as an important systematic character set in lichen-forming ascomycetes JF - Molecular Phylogenetics and Evolution Y1 - 2004 DO - 10.1016/j.ympev.2004.04.014 A1 - Schmitt, I. A1 - Lumbsch, H.T. SP - 43 EP - 55 VL - 33 UR - http://linkinghub.elsevier.com/retrieve/pii/S1055790304001435 ER -