TY - JOUR T1 - Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence JF - Taxon Y1 - 2010 A1 - Crespo, A. A1 - Kauff, F. A1 - Divakar, P.K. A1 - del Prado, R. A1 - Pérez-Ortega, S. A1 - Amo de Paz, G. A1 - Ferencova, Z. A1 - Blanco, O. A1 - Roca-Valiente, B. A1 - Núñez-Zapata, J. A1 - Cubas, P. A1 - Argüello, A. A1 - Elix, J.A. A1 - Esslinger, T.L. A1 - Hawksworth, D.L. A1 - Millanes, A.M. A1 - Molina, M. Carmen A1 - Wedin, M. A1 - Ahti, T. A1 - Aptroot, A. A1 - Barreno, E. A1 - Bungartz, F. A1 - Calvelo, S. A1 - Candan, M. A1 - Cole, M. A1 - Ertz, D. A1 - Goffinet, B. A1 - Lindblom, L. A1 - Lücking, R. A1 - Lutzoni, F. A1 - Mattsson, J.-E. A1 - Messuti, M.I. A1 - Miadlikowska, J. A1 - Piercey-Normore, M.D. A1 - Rico, V.J. A1 - Sipman, H.J.M. A1 - Schmitt, I. A1 - Spribille, T. A1 - Thell, A. A1 - Thor, G. A1 - Upreti, D. A1 - Lumbsch, H.T. SP - 1735 EP - 1753 VL - 59 UR - http://www.jstor.org/stable/41059870 ER - TY - JOUR T1 - Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions JF - BMC Evolutionary Biology Y1 - 2012 DO - 10.1186/1471-2148-12-176 A1 - Leavitt, S.D. A1 - Esslinger, T.L. A1 - Divakar, P.K. A1 - Lumbsch, H.T. SP - 18 pp. VL - 12 UR - http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-12-176 IS - 176 ER - TY - JOUR T1 - The sister-group relationships of the largest family of lichenized fungi, Parmeliaceae (Lecanorales, Ascomycota) JF - Fungal Biology Y1 - 2013 DO - 10.1016/j.funbio.2013.08.001 A1 - Singh, G. A1 - Divakar, P.K. A1 - Dal Grande, F. A1 - Otte, J. A1 - Parnmen, S. A1 - Wedin, M. A1 - Crespo, A. A1 - Lumbsch, H.T. A1 - Schmitt, I. SP - 715 EP - 721 VL - 117 UR - http://linkinghub.elsevier.com/retrieve/pii/S1878614613001177 ER - TY - JOUR T1 - Diversification of the newly recognized lichen-forming fungal lineage Montanelia (Parmeliaceae, Ascomycota) and its relation to key geological and climatic events JF - American Journal of Botany Y1 - 2012 DO - 10.3732/ajb.1200258 A1 - Divakar, P.K. A1 - Del-Prado, R. A1 - Lumbsch, H.T. A1 - Wedin, M. A1 - Esslinger, T.L. A1 - Leavitt, S.D. A1 - Crespo, A. SP - 2014 EP - 2026 VL - 99 UR - http://doi.wiley.com/10.3732/ajb.1200258 ER - TY - JOUR T1 - Molecular sequence data from populations of Bryoria fuscescens s. lat. in the mountains of central Spain indicates a mismatch between haplotypes and chemotypes JF - Lichenologist Y1 - 2015 DO - 10.1017/S0024282915000274 A1 - Boluda, C.G. A1 - Rico, V.J. A1 - Crespo, A. A1 - Divakar, P.K. A1 - Hawksworth, D.L. SP - 279 EP - 286 VL - 47 UR - http://www.journals.cambridge.org/abstract_S0024282915000274 ER - TY - JOUR T1 - Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus Protoparmelia (Lecanorales, Ascomycota) JF - PLOS ONE Y1 - 2015 DO - 10.1371/journal.pone.0124625 A1 - Singh, G. A1 - Dal Grande, F. A1 - Divakar, P.K. A1 - Otte, J. A1 - Leavitt, S.D. A1 - Szczepanska, K. A1 - Crespo, A. A1 - Rico, V.J. A1 - Aptroot, A. A1 - Cáceres, M.E. da Silva A1 - Lumbsch, H.T. A1 - Schmitt, I. ED - Fontaneto, D. SP - e0124625 VL - 10 UR - http://dx.plos.org/10.1371/journal.pone.0124625 IS - 5 ER - TY - JOUR T1 - Molecular studies on Punctelia species of the Iberian Peninsula, with an emphasis on specimens newly colonizing Madrid JF - Lichenologist Y1 - 1999 DO - 10.1017/S0024282904014434 A1 - Crespo, A. A1 - Divakar, P.K. A1 - Argüello, A. A1 - Gasca, C. A1 - Hawksworth, D.L. SP - 299 EP - 308 VL - 36 UR - https://www.cambridge.org/core/services/aop-cambridge-core/content/view/S0024282904014434 ER - TY - JOUR T1 - Genetic distances within and among species in monophyletic lineages of Parmeliaceae (Ascomycota) as a tool for taxon delimitation JF - Molecular Phylogenetics and Evolution Y1 - 2010 DO - 10.1016/j.ympev.2010.04.014 A1 - Del-Prado, R. A1 - Cubas, P. A1 - Lumbsch, H.T. A1 - Divakar, P.K. A1 - Blanco, O. A1 - de Paz, G. Amo A1 - Molina, M.C. A1 - Crespo, A. SP - 125 EP - 133 VL - 56 UR - http://linkinghub.elsevier.com/retrieve/pii/S1055790310001685 ER - TY - JOUR T1 - Circumscription of the genus Lepra, a recently resurrected genus to accommodate the “Variolaria”-group of Pertusaria sensu lato (Pertusariales, Ascomycota) JF - PLoS ONE Y1 - 2017 DO - 10.1371/journal.pone.018028410 A1 - Wei, X.-l. A1 - Schmitt, I. A1 - Hodkinson, B. A1 - Flakus, A. A1 - Kukwa, M. A1 - Divakar, P.K. A1 - Kirika, P.M. A1 - Otte, J. A1 - Meiser, A. A1 - Lumbsch, H.T. ED - Baruffini, E. SP - e0180284 VL - 12 UR - http://dx.plos.org/10.1371/journal.pone.0180284 IS - 7 ER - TY - JOUR T1 - Using a temporal phylogenetic method to harmonize family- and genus-level classification in the largest clade of lichen-forming fungi JF - Fungal Diversity Y1 - 2017 DO - 10.1007/s13225-017-0379-z A1 - Divakar, P.K. A1 - Crespo, A. A1 - Kraichak, E. A1 - Leavitt, S.D. A1 - Singh, G. A1 - Schmitt, I. A1 - Lumbsch, H.T. SP - 101 EP - 117 VL - 84 UR - http://link.springer.com/10.1007/s13225-017-0379-z ER - TY - JOUR T1 - The cetrarioid core group revisited (Lecanorales: Parmeliaceae) JF - Lichenologist Y1 - 2011 DO - 10.1017/S0024282911000508 A1 - Nelsen, M.P. A1 - Chavez, N. A1 - Sackett-Hermann, E. A1 - Thell, A. A1 - Randlane, T. A1 - Divakar, P.K. A1 - Rico, V.J. A1 - Lumbsch, H.T. SP - 537 EP - 551 VL - 43 UR - https://www.cambridge.org/core/services/aop-cambridge-core/content/view/S0024282911000508 ER - TY - JOUR T1 - A DNA barcoding approach for identification of hidden diversity in Parmeliaceae (Ascomycota): Parmelia sensu stricto as a case study JF - Botanical Journal of the Linnean Society Y1 - 2016 DO - 10.1111/boj.12358 A1 - Divakar, P.K. A1 - Leavitt, S.D. A1 - Molina, M. Carmen A1 - Del-Prado, R. A1 - Lumbsch, H.T. A1 - Crespo, A. SP - 21 EP - 29 VL - 180 UR - https://academic.oup.com/botlinnean/article-lookup/doi/10.1111/boj.12358 ER - TY - JOUR T1 - Another example of cryptic diversity in lichen-forming fungi: the new species Parmelia mayi (Ascomycota: Parmeliaceae) JF - Organisms Diversity & Evolution Y1 - 2011 DO - 10.1007/s13127-011-0060-4 A1 - Molina, M. Carmen A1 - Del-Prado, R. A1 - Divakar, P.K. A1 - Sánchez-Mata, D. A1 - Crespo, A. SP - 331 EP - 342 VL - 11 UR - http://link.springer.com/10.1007/s13127-011-0060-4 ER - TY - JOUR T1 - Conundrums in species concepts: the discovery of a new cryptic species segregated from Parmelina tiliacea (Ascomycota: Parmeliaceae) JF - Lichenologist Y1 - 2011 DO - 10.1017/S002428291100051X A1 - Núñez-Zapata, J. A1 - Divakar, P.K. A1 - del Prado, R. A1 - Cubas, P. A1 - Hawksworth, D.L. A1 - Crespo, A. SP - 603 EP - 616 VL - 43 UR - https://www.cambridge.org/core/services/aop-cambridge-core/content/view/S002428291100051X ER - TY - JOUR T1 - Upper cortex anatomy corroborates phylogenetic hypothesis in species of Physconia (Ascomycota, Lecanoromycetes) JF - Mycological Research Y1 - 2007 DO - 10.1016/j.mycres.2007.08.009 A1 - Divakar, P.K. A1 - Amo de Paz, G. A1 - del Prado, R. A1 - Esslinger, T.L. A1 - Crespo, A. SP - 1311 EP - 1320 VL - 111 UR - http://linkinghub.elsevier.com/retrieve/pii/S0953756207001931 ER - TY - JOUR T1 - Towards a revised generic classification of lecanoroid lichens (Lecanoraceae, Ascomycota) based on molecular, morphological and chemical evidence JF - Fungal Diversity Y1 - 2016 DO - 10.1007/s13225-015-0354-5 A1 - Zhao, X. A1 - Leavitt, S.D. A1 - Zhao, Z.T. A1 - Zhang, L.L. A1 - Arup, U. A1 - Grube, M. A1 - Pérez-Ortega, S. A1 - Printzen, C. A1 - Śliwa, L. A1 - Kraichak, E. A1 - Divakar, P.K. A1 - Crespo, A. A1 - Lumbsch, H.T. SP - 293 EP - 304 VL - 78 UR - http://link.springer.com/10.1007/s13225-015-0354-5 ER - TY - JOUR T1 - Molecular phylogenetic studies reveal an undescribed species within the North American concept of Melanelixia glabra (Parmeliaceae) JF - Fungal Diversity Y1 - 2010 DO - 10.1007/s13225-010-0027-3 A1 - Divakar, P.K. A1 - Figueras, G. A1 - Hladun, N.L. A1 - Crespo, A. SP - 47 EP - 55 VL - 42 UR - http://link.springer.com/10.1007/s13225-010-0027-3 ER - TY - JOUR T1 - Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene JF - Molecular and Phylogenetic Evolution Y1 - 2007 DO - 10.1016/j.ympev.2006.11.029 A1 - Crespo, A. A1 - Lumbsch, H.T. A1 - Mattsson, J.-E. A1 - Blanco, O. A1 - Divakar, P.K. A1 - Articus, K. A1 - Wiklund, E. A1 - Bawingan, P.A. A1 - Wedin, M. SP - 812 EP - 824 AB -

Parmeliaceae is the largest family of lichen-forming fungi with more than 2000 species and includes taxa with different growth forms. Morphology was widely employed to distinguish groups within this large, cosmopolitan family. In this study we test these morphology-based groupings using DNA sequence data from three nuclear and one mitochondrial marker from 120 taxa that include 59 genera and represent the morphological and chemical diversity in this lineage. Parmeliaceae is strongly supported as monophyletic and six well-supported main clades can be distinguished within the family. The relationships among them remain unresolved. The clades largely agree with the morphology-based groupings and only the placement of four of the genera studied is rejected by molecular data, while four other genera belong to clades previously unrecognised. The classification of these previously misplaced genera, however, has already been questioned by some authors based on morphological evidence. These results support morphological characters as important for the identification of monophyletic clades within Parmeliaceae.

VL - 44 ER - TY - JOUR T1 - Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene JF - Molecular Phylogenetics and Evolution Y1 - 2007 DO - 10.1016/j.ympev.2006.11.029 A1 - Crespo, A. A1 - Lumbsch, H.T. A1 - Mattsson, J.-E. A1 - Blanco, O. A1 - Divakar, P.K. A1 - Articus, K. A1 - Wiklund, E. A1 - Bawingan, P.A. A1 - Wedin, M. SP - 812 EP - 824 VL - 44 UR - http://linkinghub.elsevier.com/retrieve/pii/S1055790306004854 JO - Molecular Phylogenetics and Evolution ER - TY - JOUR T1 - Testing the use of ITS rDNA and protein-coding genes in the generic and species delimitation of the lichen genus Usnea (Parmeliaceae, Ascomycota) JF - Molecular Phylogenetics and Evolution Y1 - 2013 DO - 10.1016/j.ympev.2013.04.005 A1 - Truong, C. A1 - Divakar, P.K. A1 - Yahr, R. A1 - Crespo, A. A1 - Clerc, P. SP - 357 EP - 372 VL - 68 JO - Molecular Phylogenetics and Evolution ER -