06150nas a2200205 4500008004100000022001400041245017900055210006900234300001200303490000700315520546000322100001505782700001305797700002105810700001605831700001305847700001505860700002505875856004405900 2019 eng d a2657-500000aBiodiversity assessment of ascomycetes inhabiting Lobariella lichens in Andean cloud forests led to one new family, three new genera and 13 new species of lichenicolous fungi0 aBiodiversity assessment of ascomycetes inhabiting Lobariella lic a283-3440 v643 a
AbstractNeotropical mountain forests are characterized by having hyperdiverse and unusual fungi inhabiting lichens. The great majority of these lichenicolous fungi (i.e., detectable by light microscopy) remain undescribed and their phylogenetic relationships are mostly unknown. This study focuses on lichenicolous fungi inhabiting the genus Lobariella (Peltigerales), one of the most important lichen hosts in the Andean cloud forests. Based on molecular and morphological data, three new genera are introduced: Lawreyella gen. nov. (Cordieritidaceae, for Unguiculariopsis lobariella), Neobaryopsis gen. nov. (Cordycipitaceae), and Pseudodidymocyrtis gen. nov. (Didymosphaeriaceae). Nine additional new species are described (Abrothallus subhalei sp. nov., Atronectria lobariellae sp. nov., Corticifraga microspora sp. nov., Epithamnolia rugosopycnidiata sp. nov., Lichenotubeufia cryptica sp. nov., Neobaryopsis andensis sp. nov., Pseudodidymocyrtis lobariellae sp. nov., Rhagadostomella hypolobariella sp. nov., and Xylaria lichenicola sp. nov.). Phylogenetic placements of 13 lichenicolous species are reported here for Abrothallus, Arthonia, Globonectria, Lawreyella, Monodictys, Neobaryopsis, Pseudodidymocyrtis, Sclerococcum, Trichonectria and Xylaria. The name Sclerococcum ricasoliae comb. nov. is reestablished for the neotropical populations formerly named S. lobariellum (Sclerococcales). A key to sexual and asexual states of 40 species of lobariellicolous ascomycetous fungi is provided. Teleomorph-anamorph connections were established for several species using molecular methods and/or visual observations in nature. Additionally, we found that the anamorphic species Cornutispora ophiurospora inhabiting Lobariella was often accompanied by ascomata of Spirographa. Results of phylogenetic analyses, including newly generated sequences of several Cornutispora and Spirographa species inhabiting various host lichens, support the conclusion that Cornutispora is a synonym of Spirographa. Our Maximum Likelihood inference based on multiple loci show that all studied Spirographa (including Cornutispora) belong to a new lineage within Ostropales. Based on these highly supported phylogenetic placements and the distinct character states of their conidiomata, in comparison with other Lecanoromycetes, a new family is proposed – Spirographaceae fam. nov. This new lineage includes broadly distributed mycoparasites, inhabiting various lichen and fungal hosts, and representing an early diversification event preceding the lichen-forming clade of Fissurinaceae, Gomphillaceae and Graphidaceae. Two lichenicolous species, Asteroglobulus giselae and Pleoscutula arsenii, were found to be nested within the Spirographa clade, and their teleomorph-anamorph connections were confirmed based on genotypic and phenotypic data. This phylogenetic result is corroborated by their highly similar ascomata anatomy. Together these results strongly indicate that both species are congeneric with Spirographa. As a result, four new species (S. aggregata sp. nov., S. galligena sp. nov., S. maroneae sp. nov., and S. parmotrematis sp. nov.) and 15 new combinations are proposed (Spirographa ascaridiella comb. nov., S. arsenii comb. nov., S. ciliata comb. nov., S. giselae comb. nov., S. herteliana comb. nov., S. hypotrachynae comb. nov., S. intermedia comb. nov., S. lichenicola comb. nov., S. limaciformis comb. nov., S. ophiurospora comb. nov., S. pittii comb. nov., S. pyramidalis comb. nov., S. triangularis comb. nov., S. tricupulata comb. nov., and S. vermiformis comb. nov.). Species of the genus Spirographa, as outlined here, are strongly host-specific, mainly at the generic level of their host. Some host genera can harbour more than one Spirographa species.
1 aFlakus, A.1 aEtayo, J1 aMiadlikowska, J.1 aLutzoni, F.1 aKukwa, M1 aMatura, N.1 aRodriguez-Flakus, P. uhttp://dx.doi.org/10.2478/pfs-2019-002201630nas a2200601 4500008004100000245014500041210006900186300001400255490000700269100001500276700001400291700001800305700001800323700002200341700001800363700001800381700001500399700002200414700002300436700001400459700001800473700001400491700001900505700002000524700001900544700001900563700001300582700001200595700001500607700001600622700001600638700001600654700001500670700001300685700001300698700001700711700001700728700001600745700001600761700002000777700001800797700002100815700002600836700001500862700001800877700001600895700001700911700001400928700001300942700001500955700001700970856004100987 2010 eng d00aPhylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence0 aPhylogenetic generic classification of parmelioid lichens Parmel a1735-17530 v591 aCrespo, A.1 aKauff, F.1 aDivakar, P.K.1 adel Prado, R.1 aPérez-Ortega, S.1 aAmo de Paz, G1 aFerencova, Z.1 aBlanco, O.1 aRoca-Valiente, B.1 aNúñez-Zapata, J.1 aCubas, P.1 aArgüello, A.1 aElix, J A1 aEsslinger, T L1 aHawksworth, D L1 aMillanes, A.M.1 aMolina, Carmen1 aWedin, M1 aAhti, T1 aAptroot, A1 aBarreno, E.1 aBungartz, F1 aCalvelo, S.1 aCandan, M.1 aCole, M.1 aErtz, D.1 aGoffinet, B.1 aLindblom, L.1 aLücking, R1 aLutzoni, F.1 aMattsson, J.-E.1 aMessuti, M.I.1 aMiadlikowska, J.1 aPiercey-Normore, M.D.1 aRico, V.J.1 aSipman, H J M1 aSchmitt, I.1 aSpribille, T1 aThell, A.1 aThor, G.1 aUpreti, D.1 aLumbsch, H T uhttp://www.jstor.org/stable/4105987000599nas a2200169 4500008004100000022001400041245012400055210006900179300001000248490000700258100001500265700002100280700001700301700001800318700001600336856007700352 2016 eng d a1063-515700aMacroevolution of specificity in cyanolichens of the genus Peltigera section Polydactylon (Lecanoromycetes, Ascomycota)0 aMacroevolution of specificity in cyanolichens of the genus Pelti a74-990 v661 aMagain, N.1 aMiadlikowska, J.1 aGoffinet, B.1 aSérusiaux, E1 aLutzoni, F. uhttps://academic.oup.com/sysbio/article-lookup/doi/10.1093/sysbio/syw06500837nas a2200241 4500008004100000022001300041245019800054210006900252300001000321490000800331100001500339700002100354700001600375700001800391700001500409700001800424700001600442700002000458700001700478700001800495700001600513856006600529 2017 eng d a1055790300aConserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon0 aConserved genomic collinearity as a source of broadly applicable a10-290 v1171 aMagain, N.1 aMiadlikowska, J.1 aMueller, O.1 aGajdeczka, M.1 aTruong, C.1 aSalamov, A.A.1 aDubchak, I.1 aGrigoriev, I.V.1 aGoffinet, B.1 aSérusiaux, E1 aLutzoni, F. uhttp://linkinghub.elsevier.com/retrieve/pii/S105579031730636X00809nas a2200253 4500008004100000022001400041245015300055210006900208300001300277490000800290100001600298700002100314700001500335700002600350700001900376700001500395700002000410700001300430700001300443700001700456700001400473700001600487856005200503 2011 eng d a0027-551400aPhylogenetic affiliations of members of the heterogeneous lichen-forming fungi of the genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota)0 aPhylogenetic affiliations of members of the heterogeneous lichen a983-10030 v1031 aSchmull, M.1 aMiadlikowska, J.1 aPelzer, M.1 aStocker-Worgotter, E.1 aHofstetter, V.1 aFraker, E.1 aHodkinson, B.P.1 aReeb, V.1 aKukwa, M1 aLumbsch, H T1 aKauff, F.1 aLutzoni, F. uhttp://www.mycologia.org/cgi/doi/10.3852/10-23400570nas a2200169 4500008004100000022001400041245010800055210006900163300001200232490000800244100001400252700002100266700002000287700001500307700001600322856006200338 2012 eng d a0007-274500aAre widespread morphospecies from the Lecanora dispersa group (lichen-forming Ascomycota) monophyletic?0 aAre widespread morphospecies from the Lecanora dispersa group li a265-2770 v1151 aŚliwa, L1 aMiadlikowska, J.1 aRedelings, B.D.1 aMolnar, K.1 aLutzoni, F. uhttp://www.bioone.org/doi/abs/10.1639/0007-2745-115.2.26503023nas a2200193 4500008004100000022001400041245013300055210006900188300001200257490000700269520232100276100001602597700002102613700002002634700001602654700001802670700001702688856012402705 2016 eng d a1095-951300aContributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota).0 aContributions of North American endophytes to the phylogeny ecol a210-2320 v983 aThe Xylariaceae (Sordariomycetes) comprise one of the largest and most diverse families of Ascomycota, with at least 85 accepted genera and ca. 1343 accepted species. In addition to their frequent occurrence as saprotrophs, members of the family often are found as endophytes in living tissues of phylogenetically diverse plants and lichens. Many of these endophytes remain sterile in culture, precluding identification based on morphological characters. Previous studies indicate that endophytes are highly diverse and represent many xylariaceous genera; however, phylogenetic analyses at the family level generally have not included endophytes, such that their contributions to understanding phylogenetic relationships of Xylariaceae are not well known. Here we use a multi-locus, cumulative supermatrix approach to integrate 92 putative species of fungi isolated from plants and lichens into a phylogenetic framework for Xylariaceae. Our collection spans 1933 isolates from living and senescent tissues in five biomes across the continental United States, and here is analyzed in the context of previously published sequence data from described species and additional taxon sampling of type specimens from culture collections. We found that the majority of strains obtained in our surveys can be classified in the hypoxyloid and xylaroid subfamilies, although many also were found outside of these lineages (as currently circumscribed). Many endophytes were placed in lineages previously not known for endophytism. Most endophytes appear to represent novel species, but inferences are limited by potential gaps in public databases. By linking our data, publicly available sequence data, and records of ascomata, we identify many geographically widespread, host-generalist clades capable of symbiotic associations with diverse photosynthetic partners. Concomitant with such cosmopolitan host use and distributions, many xylariaceous endophytes appear to inhabit both living and non-living plant tissues, with potentially important roles as saprotrophs. Overall, our study reveals major gaps in the availability of multi-locus datasets and metadata for this iconic family, and provides new hypotheses regarding the ecology and evolution of endophytism and other trophic modes across the family Xylariaceae.
1 aU'Ren, J.M.1 aMiadlikowska, J.1 aZimmerman, N.B.1 aLutzoni, F.1 aStajich, J.E.1 aArnold, A.E. uhttps://fungi.myspecies.info/content/contributions-north-american-endophytes-phylogeny-ecology-and-taxonomy-xylariaceae00573nas a2200181 4500008004500000022001400045245009500059210006900154300001000223490000800233100001700241700002100258700001400279700001500293700001500308700001600323856005200339 20112011 eng d a0027-551400aSingle origin and subsequent diversification of central Andean endemic Umbilicaria species0 aSingle origin and subsequent diversification of central Andean e a45-560 v1031 aHestmark, G.1 aMiadlikowska, J.1 aKauff, F.1 aFraker, E.1 aMolnar, K.1 aLutzoni, F. uhttp://www.mycologia.org/cgi/doi/10.3852/10-01200508nas a2200121 4500008004100000245015600041210006900197300001200266490000800278100002100286700001600307856006300323 2000 eng d00aPhylogenetic revision of the genus Peltigera (lichen-forming Ascomycota) based on morphological, chemical, and large subunit nuclear ribosomal DNA data0 aPhylogenetic revision of the genus Peltigera lichenforming Ascom a925-9580 v1611 aMiadlikowska, J.1 aLutzoni, F. uhttp://www.lutzonilab.org/publications/lutzoni_file208.pdf00726nas a2200217 4500008004100000022001400041245015900055210006900214300001400283490000800297100002100305700001900326700001500345700001300360700001700373700001600390700001700406700001500423700001600438856005400454 2014 eng d a0002-912200aPhylogenetic placement, species delimitation, and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming Ascomycota, Lecanoromycetes)0 aPhylogenetic placement species delimitation and cyanobiont ident a1141-11560 v1011 aMiadlikowska, J.1 aRichardson, D.1 aMagain, N.1 aBall, B.1 aAnderson, F.1 aCameron, R.1 aLendemer, J.1 aTruong, C.1 aLutzoni, F. uhttp://www.amjbot.org/cgi/doi/10.3732/ajb.140026700572nas a2200181 4500008004100000022001400041245008200055210006900137300001200206490000800218100002100226700001600247700001900263700001500282700001600297700001500313856006200328 2011 eng d a0007-274500aHypogymnia phylogeny, including Cavernularia, reveals biogeographic structure0 aHypogymnia phylogeny including Cavernularia reveals biogeographi a392-4000 v1141 aMiadlikowska, J.1 aSchoch, C L1 aKageyama, S.A.1 aMolnar, K.1 aLutzoni, F.1 aMcCune, B. uhttp://www.bioone.org/doi/abs/10.1639/0007-2745-114.2.39201395nas a2200493 4500008004100000022001300041245015800054210006900212300001200281490000700293100002100300700001400321700001800335700001700353700001500370700001500385700001200400700001700412700001900429700001500448700002100463700001800484700001300502700001600515700001500531700001800546700001700564700001400581700001400595700001500609700001400624700002500638700001700663700001700680700001700697700001600714700001600730700001800746700001900764700001900783700001600802700001700818856006600835 2014 eng d a1055790300aA multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families0 amultigene phylogenetic synthesis for the class Lecanoromycetes A a132-1680 v791 aMiadlikowska, J.1 aKauff, F.1 aHögnabba, F.1 aOliver, J.C.1 aMolnar, K.1 aFraker, E.1 aGaya, E1 aHafellner, J1 aHofstetter, V.1 aGueidan, C1 aOtálora, M.A.G.1 aHodkinson, B.1 aKukwa, M1 aLücking, R1 aBjörk, C.1 aSipman, H J M1 aBurgaz, A.R.1 aThell, A.1 aPasso, A.1 aMyllys, L.1 aGoward, T1 aFernández-Brime, S.1 aHestmark, G.1 aLendemer, J.1 aLumbsch, H T1 aSchmull, M.1 aSchoch, C L1 aSérusiaux, E1 aMaddison, D.R.1 aArnold, A., E.1 aLutzoni, F.1 aStenroos, S. uhttp://linkinghub.elsevier.com/retrieve/pii/S105579031400129800679nas a2200205 4500008004100000022001300041245013000054210006900184300001200253490000800265100001300273700002100286700001600307700001600323700001500339700001700354700001900371700001700390856006600407 2009 eng d a0953756200aTowards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focussing on the genus Opegrapha0 aTowards a new classification of the Arthoniales Ascomycota based a141-1520 v1131 aErtz, D.1 aMiadlikowska, J.1 aLutzoni, F.1 aDessein, S.1 aRaspé, O.1 aVigneron, N.1 aHofstetter, V.1 aDiederich, P uhttp://linkinghub.elsevier.com/retrieve/pii/S0953756208002219