00325nas a2200121 4500008004100000245002400041210002400065300001000089490000900099100001600108700001600124856006300140 2020 eng d00aHypocopra brefeldii0 aHypocopra brefeldii a3 pp.0 v22351 aMinter, D W1 aCannon, P F uhttps://fungi.myspecies.info/content/hypocopra-brefeldii-000526nas a2200121 4500008004100000245011000041210006900151300001200220490000700232100001400239700001700253856013400270 1994 eng d00aKretschmariella culmorum (Cooke) comb. nov. and notes on some other monocot-inhabiting xylariaceous fungi0 aKretschmariella culmorum Cooke comb nov and notes on some other a241-2550 v511 aJu, Y.-M.1 aRogers, J.D. uhttps://fungi.myspecies.info/content/kretschmariella-culmorum-cooke-comb-nov-and-notes-some-other-monocot-inhabiting-xylariaceous00400nas a2200121 4500008004100000245007900041210006900120300000900189490000700198100001600205700001700221856004000238 1993 eng d00aRosellinia and Astrocystis (Xylariaceae): new species and generic concepts0 aRosellinia and Astrocystis Xylariaceae new species and generic c a1-700 v491 aLaessoe, T.1 aSpooner, B M uhttp://www.jstor.org/stable/411019900493nas a2200121 4500008004100000245008700041210006900128300001200197490000700209100002100216700002100237856011300258 1964 eng d00aGeniculosporium serpens gen. et sp. nov., the imperfect stage of Hypoxylon serpens0 aGeniculosporium serpens gen et sp nov the imperfect stage of Hyp a393-4010 v471 aChesters, C.G.C.1 aGreenhalgh, G.N. uhttps://fungi.myspecies.info/content/geniculosporium-serpens-gen-et-sp-nov-imperfect-stage-hypoxylon-serpens00696nas a2200217 4500008004100000022001400041245010900055210006900164100001400233700001400247700001600261700002000277700001600297700001700313700001700330700002100347700002300368700001600391700001600407856005500423 2017 eng d a1617-416X00aResurrection and emendation of the Hypoxylaceae, recognised from a multigene phylogeny of the Xylariales0 aResurrection and emendation of the Hypoxylaceae recognised from 1 aWendt, L.1 aSir, E.B.1 aKuhnert, E.1 aHeitkämper, S.1 aLambert, C.1 aHladki, A.I.1 aRomero, A.I.1 aLuangsa-Ard, J J1 aSrikitikulchai, P.1 aPeršoh, D.1 aStadler, M. uhttp://link.springer.com/10.1007/s11557-017-1311-300334nas a2200109 4500008004100000245004600041210004600087300001200133490000700145100001600152856005600168 1993 eng d00aRosellinia species of the temperate zones0 aRosellinia species of the temperate zones a169-2810 v441 aPetrini, L. uhttps://www.zobodat.at/pdf/Sydowia_44_0169-0281.pdf00340nas a2200121 4500008004100000245002900041210002900070300001000099490000900109100001600118700001600134856006800150 2014 eng d00aAnthostomella tomicoides0 aAnthostomella tomicoides a5 pp.0 v19901 aMinter, D W1 aCannon, P F uhttps://fungi.myspecies.info/content/anthostomella-tomicoides-000318nas a2200109 4500008004100000245003300041210003000074300001100104490000800115100001800123856006700141 1975 eng d00aAnthostomella Sacc. (Part 1)0 aAnthostomella Sacc Part 1 a97 pp.0 v1391 aFrancis, S.M. uhttps://fungi.myspecies.info/content/anthostomella-sacc-part-100331nas a2200121 4500008004100000245002600041210002600067300001000093490000900103100001600112700001600128856006500144 2014 eng d00aAnthostomella caricis0 aAnthostomella caricis a3 pp.0 v19841 aMinter, D W1 aCannon, P F uhttps://fungi.myspecies.info/content/anthostomella-caricis-000555nas a2200181 4500008004100000022001400041245008300055210006900138300001200207490000800219100001600227700001600243700001300259700001700272700001600289700001600305856005200321 2009 eng d a0027-551400aMolecular and morphological evidence for the delimitation of Xylaria hypoxylon0 aMolecular and morphological evidence for the delimitation of Xyl a256-2680 v1011 aPeršoh, D.1 aMelcher, M.1 aGraf, K.1 aFournier, J.1 aStadler, M.1 aRambold, G. uhttp://www.mycologia.org/cgi/doi/10.3852/08-10800459nas a2200157 4500008004100000022001400041245005500055210005500110300001000165490000700175100001700182700001500199700001600214700001600230856005500246 2011 eng d a1617-416X00aThree new Xylaria species from southwestern Europe0 aThree new Xylaria species from southwestern Europe a33-520 v101 aFournier, J.1 aFlessa, F.1 aPeršoh, D.1 aStadler, M. uhttp://link.springer.com/10.1007/s11557-010-0671-800456nas a2200109 4500008004100000245008800041210006900129300000900198490000700207100001600214856011600230 2016 eng d00aXylaria cinerea and X. crozonensis: two distinctive additions to the British mycota0 aXylaria cinerea and X crozonensis two distinctive additions to t a7-110 v171 aHenrici, A. uhttps://fungi.myspecies.info/content/xylaria-cinerea-and-x-crozonensis-two-distinctive-additions-british-mycota00305nas a2200097 4500008004100000245004200041210004200083490000900125100001700134856005600151 2014 eng d00aUpdate on European species of Xylaria0 aUpdate on European species of Xylaria0 v20161 aFournier, J. uhttp://www.ascofrance.fr/uploads/xylaria/201406.pdf00557nas a2200157 4500008004100000245009100041210006900132300001200201490000700213100001600220700001800236700001500254700002900269700001400298856008700312 2008 eng d00aMolecular phylogenetic studies within the Xylariaceae based on ribosomal DNA sequences0 aMolecular phylogenetic studies within the Xylariaceae based on r a111-1340 v311 aPeláez, F.1 aGonzález, V.1 aPlatas, G.1 aSánchez-Ballesteros, J.1 aRubio, V. uhttp://digital.csic.es/bitstream/10261/15516/1/43.%20Pelaez%20et%20al.,%202008.pdf03023nas a2200193 4500008004100000022001400041245013300055210006900188300001200257490000700269520232100276100001602597700002102613700002002634700001602654700001802670700001702688856012402705 2016 eng d a1095-951300aContributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota).0 aContributions of North American endophytes to the phylogeny ecol a210-2320 v983 a
The Xylariaceae (Sordariomycetes) comprise one of the largest and most diverse families of Ascomycota, with at least 85 accepted genera and ca. 1343 accepted species. In addition to their frequent occurrence as saprotrophs, members of the family often are found as endophytes in living tissues of phylogenetically diverse plants and lichens. Many of these endophytes remain sterile in culture, precluding identification based on morphological characters. Previous studies indicate that endophytes are highly diverse and represent many xylariaceous genera; however, phylogenetic analyses at the family level generally have not included endophytes, such that their contributions to understanding phylogenetic relationships of Xylariaceae are not well known. Here we use a multi-locus, cumulative supermatrix approach to integrate 92 putative species of fungi isolated from plants and lichens into a phylogenetic framework for Xylariaceae. Our collection spans 1933 isolates from living and senescent tissues in five biomes across the continental United States, and here is analyzed in the context of previously published sequence data from described species and additional taxon sampling of type specimens from culture collections. We found that the majority of strains obtained in our surveys can be classified in the hypoxyloid and xylaroid subfamilies, although many also were found outside of these lineages (as currently circumscribed). Many endophytes were placed in lineages previously not known for endophytism. Most endophytes appear to represent novel species, but inferences are limited by potential gaps in public databases. By linking our data, publicly available sequence data, and records of ascomata, we identify many geographically widespread, host-generalist clades capable of symbiotic associations with diverse photosynthetic partners. Concomitant with such cosmopolitan host use and distributions, many xylariaceous endophytes appear to inhabit both living and non-living plant tissues, with potentially important roles as saprotrophs. Overall, our study reveals major gaps in the availability of multi-locus datasets and metadata for this iconic family, and provides new hypotheses regarding the ecology and evolution of endophytism and other trophic modes across the family Xylariaceae.
1 aU'Ren, J.M.1 aMiadlikowska, J.1 aZimmerman, N.B.1 aLutzoni, F.1 aStajich, J.E.1 aArnold, A.E. uhttps://fungi.myspecies.info/content/contributions-north-american-endophytes-phylogeny-ecology-and-taxonomy-xylariaceae00459nas a2200109 4500008004100000245008500041210006900126300001200195490000700207100001700214856011800231 1983 eng d00aXylaria bulbosa, Xylaria curta and Xylaria longipes in continental United States0 aXylaria bulbosa Xylaria curta and Xylaria longipes in continenta a457-4670 v751 aRogers, J.D. uhttps://fungi.myspecies.info/content/xylaria-bulbosa-xylaria-curta-and-xylaria-longipes-continental-united-states00343nas a2200121 4500008004100000245003000041210003000071300001000101490000900111100001600120700001600136856006900152 2014 eng d00aAnthostomella alchemillae0 aAnthostomella alchemillae a3 pp.0 v19811 aMinter, D W1 aCannon, P F uhttps://fungi.myspecies.info/content/anthostomella-alchemillae-000486nas a2200145 4500008004100000245006100041210005900102300001400161490000700175100001400182700001700196700001700213700001900230856009100249 2004 eng d00aAmphirosellinia gen. nov. and a new species of Entoleuca0 aAmphirosellinia gen nov and a new species of Entoleuca a1393-14020 v961 aJu, Y.-M.1 aRogers, J.D.1 aHsieh, H.-M.1 aVasilyeva, L N uhttps://fungi.myspecies.info/content/amphirosellinia-gen-nov-and-new-species-entoleuca00468nas a2200121 4500008004100000245007700041210006900118300000900187490000700196100001700203700001700220856010900237 1993 eng d00aRosellinia & Astrocystis (Xylariaceae): new species and generic concepts0 aRosellinia Astrocystis Xylariaceae new species and generic conce a1-700 v491 aLæssøe, T.1 aSpooner, B M uhttps://fungi.myspecies.info/content/rosellinia-astrocystis-xylariaceae-new-species-and-generic-concepts00445nas a2200121 4500008004100000245007100041210006500112300000700177490000700184100001400191700001600205856010200221 2004 eng d00aValidation de taxon: Xylaria crozonensis Leroy & Mornand, sp. nov.0 aValidation de taxon Xylaria crozonensis Leroy Mornand sp nov a350 v331 aLeroy, P.1 aMornand, J. uhttps://fungi.myspecies.info/content/validation-de-taxon-xylaria-crozonensis-leroy-mornand-sp-nov00678nas a2200193 4500008004100000022001300041245016500054210006900219300001200288490000700300100001700307700001500324700001600339700001700355700001700372700001500389700001400404856006600418 2010 eng d a1055790300aPhylogenetic status of Xylaria subgenus Pseudoxylaria among taxa of the subfamily Xylarioideae (Xylariaceae) and phylogeny of the taxa involved in the subfamily0 aPhylogenetic status of Xylaria subgenus Pseudoxylaria among taxa a957-9690 v541 aHsieh, H.-M.1 aLin, C.-R.1 aFang, M.-J.1 aRogers, J.D.1 aFournier, J.1 aLechat, C.1 aJu, Y.-M. uhttp://linkinghub.elsevier.com/retrieve/pii/S105579030900521100370nas a2200133 4500008004100000022001300041245003600054210003000090300001100120490000700131100001400138700001700152856006700169 2002 eng d a0029503500aThe genus Nemania (Xylariaceae)0 agenus Nemania Xylariaceae a75-1200 v741 aJu, Y.-M.1 aRogers, J.D. uhttps://fungi.myspecies.info/content/genus-nemania-xylariaceae00361nas a2200109 4500008004100000245004800041210004800089300001000137490000700147100001500154856008200169 1985 eng d00aReassessment of Hypoxylon serpens complex I0 aReassessment of Hypoxylon serpens complex I a15-250 v391 aPouzar, Z. uhttps://fungi.myspecies.info/content/reassessment-hypoxylon-serpens-complex-i00432nas a2200145 4500008004100000022001300041245004300054210004100097300001200138490000700150100002000157700001800177700001800195856007300213 1983 eng d a0007153600aHypoxylon gwyneddii sp.nov. from Wales0 aHypoxylon gwyneddii spnov from Wales a389-3920 v811 aWhalley, A.J.S.1 aEdwards, R.L.1 aFrancis, S.M. uhttps://fungi.myspecies.info/content/hypoxylon-gwyneddii-spnov-wales00353nas a2200109 4500008004100000245004600041210004500087300001200132490000700144100001200151856008000163 1957 eng d00aDanish Pyrenomycetes. A preliminary flora0 aDanish Pyrenomycetes A preliminary flora a491 pp.0 v171 aMunk, A uhttps://fungi.myspecies.info/content/danish-pyrenomycetes-preliminary-flora