@article {5605, title = {Pyrenomycetes of the Great Smoky Mountains National Park. II. Cryptovalsa Ces. et De Not. and Diatrypella (Ces. et De Not.) Nitschke (Diatrypaceae)}, journal = {Fungal Diversity}, volume = {19}, year = {2005}, pages = {189-200}, url = {https://www.fungaldiversity.org/fdp/sfdp/19-12.pdf}, author = {Vasilyeva, L.N. and Stephenson, S.L.} } @mastersthesis {5284, title = {Fungi on common reed (Phragmites australis). Fungal diversity, community structure and decompositions processes}, volume = {PhD}, year = {2005}, pages = {440 pp.}, school = {Universiteit Gent}, url = {https://www.researchgate.net/profile/Gunther_Ryckegem/publication/292348432_Fungi_on_common_reed_phragmites_australis_fungal_diversity_community_structure_and_decomposition_processes_Gunther_Van_Ryckegem/links/574bf91a08ae5bf2e63f43f9.pdf}, author = {van Ryckegem, G.} } @article {5049, title = {Lectotypification and status of Isaria Pers.: Fr.}, journal = {Taxon}, volume = {54}, year = {2005}, pages = {485-489}, url = {https://www.jstor.org/stable/25065379}, author = {Hodge, K.T. and Gams, W. and Samson, R.A. and Korf, R.P. and Seifert, K.A.} } @article {4611, title = {A new Atlantic species in Fuscopannaria, with a key to its European species}, journal = {Lichenologist}, volume = {37}, year = {2005}, month = {221-225}, issn = {0024-2829}, doi = {10.1017/S0024282905014866}, url = {http://www.journals.cambridge.org/abstract_S0024282905014866}, author = {J{\o}rgensen, P.M.} } @article {4507, title = {Molecular phylogeny of Hypoxylon and closely related genera}, journal = {Mycologia}, volume = {97}, year = {2005}, pages = {844-865}, abstract = {

Phylogenetic relationships were inferred among several xylariaceous genera with Nodulisporium or nodulisporium-like anamorphs based on the analyses of beta-tubulin and alpha-actin sequences. One hundred nine cultures and three specimens of 83 representatives of these four genera were included in the study. Biscogniauxia taxa formed a well supported clade that was basal to the other taxa, while taxa of Hypoxylon and Daldinia comprised a large monophyletic group that contained two subclades. The first subclade encompassed Hypoxylon sect. Annulata and is accepted here as the new genus Annulohypoxylon. The second subclade contained taxa of Hypoxylon sect. Hypoxylon and Daldinia. Hypoxylon is restricted to include only those taxa in sect. Hypoxylon. Thirty-three epithets are made in Annulohypoxylon. Hypoxylon cohaerens var. microsporum is raised to the species level and accepted as A. minutellum. Hypoxylon polyporoideum is recognized as distinct from H. crocopeplum. Hypoxylon placentiforme is accepted as Daldinia placentiformis.

}, keywords = {Actins, DNA, Fungal, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA, Species Specificity, Tubulin, Xylariales}, issn = {0027-5514}, author = {Hsieh, H.M. and Ju, Y.-M. and Rogers, J.D.} } @article {4494, title = {Different evolutionary histories of two Phragmidium species infecting the same dog rose hosts}, journal = {Mycological Research}, volume = {109}, year = {2005}, pages = {603-609}, issn = {09537562}, doi = {10.1017/S0953756205002844}, url = {http://linkinghub.elsevier.com/retrieve/pii/S0953756208614574}, author = {Ritz, C.M. and Maier, W.F.A. and Oberwinkler, F. and Wissemann, V.} } @article {4470, title = {The genus Porpidia in northern and western Europe, with special emphasis on collections from the British Isles}, journal = {Lichenologist}, volume = {37}, year = {2005}, pages = {1 -35}, issn = {0024-2829}, doi = {10.1017/S0024282904014628}, url = {https://www.cambridge.org/core/services/aop-cambridge-core/content/view/S0024282904014628}, author = {Fryday, A.M.} } @article {4369, title = {Parmelia barrenoae, a new lichen species related to Parmelia sulcata (Parmeliaceae) based on molecular and morphological data}, journal = {Lichenologist}, volume = {37}, year = {2005}, pages = {37-46}, issn = {0024-2829}, doi = {10.1017/S0024282904014641}, url = {http://www.journals.cambridge.org/abstract_S0024282904014641}, author = {Divakar, Pradeep K. and Molina, M. Carmen and Lumbsch, H.T. and Crespo, A.} } @article {4286, title = {Lecania fructigena Zahlbr., a coastal saxicolous lichen new for Europe, with notes on related species}, journal = {Lichenologist}, volume = {37}, year = {2005}, pages = {277-283}, issn = {0024-2829}, doi = {10.1017/S0024282905014842}, url = {http://www.journals.cambridge.org/abstract_S0024282905014842}, author = {Van den Boom, P.P.G. and Brand, A.M.} } @article {4255, title = {Molecular evidence supports the distinction between Xanthoria parietina and X. aureola (Teloschistaceae, lichenized Ascomycota).}, journal = {Mycological Research}, volume = {109}, year = {2005}, pages = {187-199}, abstract = {

This study aims to clarify taxonomic relationships within the current concept of Xanthoria parietina in northern Europe. For comparison, X. calcicola was also included in the study. Morphological as well as molecular data were utilized. Morphology indicated the presence of three species, Xanthoria parietina, X. calcicola, and X. aureola, the latter of which is resurrected here from synonymy. The most important separating characters involve colour and thickness of the thallus, lobe width, morphology of laminar structures, and the texture of the upper surface. X. aureola, as recognized here, mostly occurs on seashore rocks. Part of the IGS region as well as the complete ITS were sequenced in 70 individual thalli representing ten geographical regions in Europe. In total, 19 different IGS haplotypes and 20 different ITS haplotypes were present in the data set. Owing to indications of possible recombination between the IGS and the ITS, the two data sets were analyzed separately. Haplotype networks were estimated, both of which indicate that X. parietina is distinct from X. aureola and X. calcicola. In our sample, the two latter do not share haplotypes, but are only separated by a few mutational steps.

}, keywords = {Ascomycota, Base Sequence, DNA, Fungal, DNA, Ribosomal, DNA, Ribosomal Spacer, Haplotypes, Lichens, Molecular Sequence Data, Mycological Typing Techniques, Phylogeny, Recombination, Genetic, Sequence Analysis, DNA, Spores, Fungal}, issn = {0953-7562}, doi = {https://doi.org/10.1017/S0953756204001790}, author = {Lindblom, L. and Ekman, S.} } @article {4204, title = {Disintegration of the Micareaceae (lichenized Ascomycota): a molecular phylogeny based on mitochondrial rDNA sequences.}, journal = {Mycological Research}, volume = {109}, year = {2005}, pages = {21-30}, abstract = {

The phylogeny of the family Micareaceae and the genus Micarea was studied using mitochondrial small subunit ribosomal DNA sequences. Phylogenetic reconstructions were performed using Bayesian MCMC tree sampling and a maximum likelihood approach. The Micareaceae in its current sense is highly heterogeneous, and Helocarpon, Psilolechia, and Scutula, all thought to be close relatives of Micarea, are shown to be only distantly related. The genus Micarea is paraphyletic unless the entire Pilocarpaceae and Ectolechiaceae are included, as also indicated by an expected likelihood weights test. It is suggested that the Micareaceae is reduced to synonymy with the Pilocarpaceae, which also includes the Ectolechiaceae, and that Micarea may have to be divided into a series of smaller genera in the future. Micarea species with a \&$\#$39;non-micareoid\&$\#$39; photobiont group with Psora and the Ramalinaceae, whereas Micarea intrusa appears to belong in Scoliciosporum. Three species fall inside the paraphyletic Micarea: Szczawinskia tsugae, Catillaria contristans, and Fellhaneropsis vezdae. Tropical foliicolous taxa are nested within groups of mainly temperate and arctic-alpine distribution. A \&$\#$39;micareoid\&$\#$39; photobiont appears to be plesiomorphic in the Pilocarpaceae but has been lost a few times.

}, keywords = {Ascomycota, DNA, Fungal, DNA, Mitochondrial, DNA, Ribosomal, Evolution, Molecular, Lichens, Phylogeny, Sequence Analysis, DNA}, issn = {0953-7562}, url = {http://www.reelab.net/phylografter/study/download/study_file.file.aff47904dbea7823.3737355f7064662e706466.pdf}, author = {Andersen, H.L. and Ekman, S.} } @article {4079, title = {Enumeration of remarkable Japanese discomycetes (2): two inoperculate discomycetes rarely known in Japan}, journal = {Bulletin of the National Science Museum, Tokyo. Series B}, volume = {31}, year = {2005}, pages = {49-55}, author = {Hosoya, T.} } @article {4069, title = {Lichen determination keys. Mycomicrothelia}, volume = {2017}, year = {2005}, url = {http://www.bgbm.org/sipman/keys/Mycomicrothelia.htm}, author = {Sipman, H.J.M.} } @article {4025, title = {Morphotaxonomic revision of fungicolous Cladosporium species (Hyphomycetes)}, journal = {Schlechtendahlia}, volume = {13}, year = {2005}, pages = {1-78}, url = {http://public.bibliothek.uni-halle.de/index.php/schlechtendalia/article/view/335}, author = {Heuchert, B. and Braun, U. and Schubert, K.} } @article {3994, title = {A preliminary phylogeographic study of Flavopunctelia and Punctelia inferred from rDNA ITS-sequences}, journal = {Folia Cryptogamica Estonica}, volume = {41}, year = {2005}, pages = {115-122}, url = {http://www.ut.ee/ial5/fce/FCE_eLibrary/FCEeBooks/FCE41eBook.pdf}, author = {Thell, A. and Herber, B. and Aptroot, A. and Adler, M.T. and Feuerer, T. and K{\"a}rnefelt, I.} } @article {3956, title = {Distribution, status and ecology of the lichen Cyphelium notarisii in Sweden}, journal = {Annales Botanici Fennici}, volume = {42}, year = {2005}, pages = {317-326}, url = {http://www.sekj.org/PDF/anbf42/anbf42-317.pdf}, author = {Areskoug, V. and Thor, G.} } @article {3871, title = {Life history and systematics of the aquatic discomycete Mitrula (Helotiales, Ascomycota) based on cultural, morphological, and molecular studies}, journal = {American Journal of Botany}, volume = {92}, year = {2005}, pages = {1565-1574}, issn = {0002-9122}, doi = {10.3732/ajb.92.9.1565}, url = {http://www.amjbot.org/cgi/doi/10.3732/ajb.92.9.1565}, author = {Wang, Z. and Binder, M. and Hibbett, D.S.} } @article {3812, title = {Epichlo{\"e} in Britain}, journal = {Mycologist}, volume = {19}, year = {2005}, pages = {82-87}, issn = {0269-915X}, doi = {10.1017/S0269915X05002065}, url = {http://www.journals.cambridge.org/abstract_S0269915X05002065}, author = {Spooner, B.M. and Kemp, S.L.} } @article {3731, title = {Molecular phylogeny of Ustilago, Sporisorium, and related taxa based on combined analyses of rDNA sequences}, journal = {Mycological Research}, volume = {109}, year = {2005}, pages = {342-356}, issn = {09537562}, doi = {10.1017/S0953756204002229}, url = {http://linkinghub.elsevier.com/retrieve/pii/S0953756208614227}, author = {Stoll, M. and Begerow, D. and Oberwinkler, F.} } @article {3480, title = {Site Condition Monitoring for Lichens in Scotland. Knapdale Woods SSSI 1. Establishing Baseline Site Condition Monitoring}, year = {2005}, url = {http://fungi.myspecies.info/content/nephroma-knapdale-woods-sssi}, author = {Sanderson, N.A.} } @article {3373, title = {Dothidea hymeniicola: an overlooked Endococcus species on Lobaria in Central America}, journal = {Herzogia}, volume = {18}, year = {2005}, pages = {17-21}, url = {http://www.blam-hp.eu/herzogia18.html}, author = {Hawksworth, D.L.} } @article {3296, title = {Molecular phylogeny of Hypoxylon and closely related genera}, journal = {Mycologia}, volume = {97}, year = {2005}, pages = {844-865}, issn = {0027-5514}, doi = {10.3852/mycologia.97.4.844}, url = {http://www.mycologia.org/cgi/doi/10.3852/mycologia.97.4.844}, author = {Hsieh, H.-M. and Ju, Y.-M. and Rogers, J.D.} } @article {3212, title = {Caloplaca aractina UK Biodiversity Action Plan}, volume = {2015}, year = {2005}, publisher = {Plantlife}, url = {http://adlib.everysite.co.uk/resources/000/091/214/Caloplaca_aractina_dossier.pdf}, author = {Edwards, B. and Duckworth, J.} } @article {3071, title = {Milton Wood SSSI: monitoring of experimental lichen transplants of Catapyrenium psoromoides}, number = {085}, year = {2005}, pages = {25 pp}, url = {http://www.snh.org.uk/pdfs/publications/commissioned_reports/F03LH14.pdf}, author = {Coppins, A.M. and Coppins, B.J.} } @article {2975, title = {Pleosporales in Japan (5): Pleomassaria, Asteromassaria, and Splanchnonema}, journal = {Mycoscience}, volume = {46}, year = {2005}, pages = {248-260}, issn = {13403540}, doi = {10.1007/S10267-005-0245-9}, url = {http://www.sciencedirect.com/science/article/pii/S1340354005704599}, author = {Tanaka, K. and Ooki, Y. and Hatakeyama, S. and Harada, Y. and Barr, M.E.} } @article {2927, title = {Phylogenetic origins of two cleistothecial fungi, Orbicula parietina and Lasiobolidium orbiculoides, within the operculate discomycetes}, journal = {Mycologia}, volume = {97}, year = {2005}, pages = {1023-1033}, issn = {0027-5514}, doi = {10.3852/mycologia.97.5.1023}, url = {http://www.mycologia.org/cgi/doi/10.3852/mycologia.97.5.1023}, author = {Hansen, K. and Perry, B.A. and Pfister, D.H.} } @article {2908, title = {Lachnellula subtilissima}, journal = {IMI Descriptions of Fungi and Bacteria}, volume = {1649}, year = {2005}, author = {Minter, D.W.} } @article {2772, title = {Real-time PCR detection of Biscogniauxia mediterranea in symptomless oak tissue}, journal = {Letters in Applied Microbiology}, volume = {41}, year = {2005}, pages = {61-68}, issn = {0266-8254}, doi = {10.1111/lam.2005.41.issue-110.1111/j.1472-765X.2005.01701.x}, url = {http://www.blackwell-synergy.com/toc/lam/41/1http://doi.wiley.com/10.1111/j.1472-765X.2005.01701.x}, author = {Luchi, N. and Capretti, P. and Pinzani, P. and Orlando, C. and Pazzagli, M.} } @article {2734, title = {Disintegration of the Micareaceae (lichenized Ascomycota): a molecular phylogeny based on mitochondrial rDNA sequences}, journal = {Mycological Research}, volume = {109}, year = {2005}, pages = {21-30}, issn = {09537562}, doi = {10.1017/S0953756204001625}, url = {http://linkinghub.elsevier.com/retrieve/pii/S0953756208613702}, author = {Andersen, H.L. and Ekman, S.} } @article {2721, title = {Molecular phylogeny and evolution of the maple powdery mildew (Sawadaea, Erysiphaceae) inferred from nuclear rDNA sequences}, journal = {Mycological Research}, volume = {109}, year = {2005}, pages = {912-922}, issn = {09537562}, doi = {10.1017/S0953756205003527}, url = {http://linkinghub.elsevier.com/retrieve/pii/S0953756208602087}, author = {Hirose, S. and Tanda, S. and Kiss, L. and Grigaliunaite, B. and Havrylenko, M. and Takamatsu, S.} } @article {2685, title = {The type species of the genus Gnomonia, G. gnomon, and the closely related G. setacea}, journal = {Sydowia}, volume = {57}, year = {2005}, pages = {102-120}, url = {http://www.sydowia.at/syd57-1/art7-Sogonov.htm}, author = {Sogonov, M.V. and Castlebury, L.A. and Rossman, A.Y. and Farr, D.F. and White, J.F.} } @article {2626, title = {Ascoma ontogeny and apothecial anatomy in the Gyalectaceae (Ostropales, Ascomycota) support the re-establishment of the Coenogoniaceae}, journal = {Bryologist}, volume = {108}, year = {2005}, pages = {272-281}, issn = {0007-2745}, doi = {10.1639/0007-2745(2005)108[0272:AOAAAI]2.0.CO;2}, url = {http://www.bioone.org/doi/abs/10.1639/0007-2745\%282005\%29108\%5B0272\%3AAOAAAI\%5D2.0.CO\%3B2}, author = {Kauff, F. and B{\"u}del, B.} } @article {2503, title = {Species of Rhytismataceae on needles of Juniperus spp. from China}, journal = {Canadian Journal of Botany}, volume = {83}, year = {2005}, pages = {37-46}, issn = {0008-4026}, doi = {10.1139/b04-149}, author = {Hou, C.-L. and Lin, Y.-R. and Piepenbring, M.} } @article {2363, title = {A new Atlantic species in Fuscopannaria, with a key to its European species}, journal = {Lichenologist}, volume = {37}, year = {2005}, pages = {221-225}, doi = {doi:10.1017/S0024282905014866}, author = {J{\o}rgensen, P.M.} } @book {2326, title = {Lichens. An Illustrated Guide to the British and Irish Species}, year = {2005}, pages = {480 pp}, publisher = {Richmond Publishing}, organization = {Richmond Publishing}, address = {Slough, UK}, issn = {0 85546 096 2}, author = {Dobson, F.S.} } @article {2107, title = {Lichenicolous fungi from the Czech Republic II. Arthrorhaphis arctoparmeliae spec. nov. and some new records for the country}, journal = {Herzogia}, volume = {18}, year = {2005}, pages = {23-35}, url = {http://www.blam-hp.eu/Herzogia18/H18-Kocourkova\&Boom-txt.pdf}, author = {Kocourkov{\'a}, J. and Van den Boom, P.P.G.} } @article {2069, title = {Lichenicolous fungi and lichens in Estonia II: Basidiomycota and conidial fungi}, journal = {Nova Hedwigia}, volume = {80}, year = {2005}, pages = {349-365}, author = {Suija, A.} } @article {1079, title = {Battarrina inclusa, une tr{\`e}s rare Hypocr{\'e}ale commensale ou parasite de Tuber puberulum, d{\'e}couverte au Grand-Duch{\'e} de Luxembourg}, journal = {Systematics and Geography of Plants}, volume = {75}, year = {2005}, chapter = {25-34}, author = {Thoen, D. and Schultheis, B.} } @article {122, title = {Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi)}, journal = {Molecular Phylogenetics and Evolution}, volume = {35}, year = {2005}, pages = {60-75}, author = {Miller, A.N. and Huhndorf, S.M.} }