@article {5631, title = {Phylogenetic classification and generic delineation of Calyptosphaeria gen. nov., Lentomitella, Spadicoides and Torrentispora (Sordariomycetes)}, journal = {Studies in Mycology}, volume = {89}, year = {2018}, month = {Mar-01-2018}, pages = {1-62}, abstract = {

The genus Ceratostomella has a long history of taxonomic confusion. While species with evanescent asci have been transferred to the Microascales and Ophiostomatales, the taxonomic status of species with persistent asci has not been completely resolved. In previous studies using DNA sequence data, cultures and morphology, several Ceratostomella spp. were allocated in 13 genera in the Eurotiomycetes and Sordariomycetes. In our study, the systematics of the remaining Ceratostomella spp. with persistent asci is revisited with new collection data, cultures and phylogeny based on novel DNA sequences from six nuclear loci. Bayesian inference and Maximum Likelihood analyses support the monophyly of several wood-inhabiting species formerly classified in Ceratostomella and other unknown morphologically similar taxa and their division into four genera, i.e. Lentomitella, Spadicoides, Torrentispora and the newly described Calyptosphaeria. This robust clade represents the order Xenospadicoidales in the Sordariomycetidae. Comparative analysis of the ITS2 secondary structure revealed a genetic variation among Lentomitella isolates; 11 species were recognised, of which five are newly introduced and two are new combinations. Other taxonomic novelties include four new species and eight new combinations in Calyptosphaeria, Spadicoides, and Torrentispora. Molecular data suggest that Spadicoides is polyphyletic. The core of the genus is positioned in the Xenospadicoidales; Spadicoides s. str. is experimentally linked with sexual morphs for the first time. Based on DNA sequence data, the monotypic genera Xenospadicoides and Pseudodiplococcium are reduced to synonymy under Spadicoides, while Fusoidispora and Pseudoannulatascus are synonymised with Torrentispora. Members of the Xenospadicoidales inhabit decaying wood in terrestrial and freshwater environments and share a few morphological characters such as the absence of stromatic tissue, ascomata with a cylindrical or rostrate neck, similar anatomies of the ascomatal walls, thin-walled unitunicate asci with a non-amyloid apical annulus, disintegrating paraphyses, usually ellipsoidal to fusiform ascospores and holoblastic-denticulate or tretic conidiogenesis. Revised Ceratostomella spp. with persistent asci are listed and the taxonomic status of each species is re-evaluated based on revision of the holotype and other representative material, published details and available phylogenetic data.

}, issn = {0166-0616}, doi = {10.1016/j.simyco.2017.11.004}, url = {http://dx.doi.org/10.1016/j.simyco.2017.11.004}, author = {R{\'e}blov{\'a}, M. and Miller, A.N. and R{\'e}blov{\'a}, K. and Step{\'a}nek, V.} } @article {4925, title = {A molecular phylogenetic assessment of the genus Gyromitra in North America}, journal = {Mycologia}, volume = {105}, year = {2013}, pages = {1306-1314}, issn = {0027-5514}, doi = {10.3852/12-397}, url = {https://www.tandfonline.com/doi/pdf/10.3852/12-397}, author = {Methven, A.S. and Zelski, S.E. and Miller, A.N.} } @article {4502, title = {Phylogenetic placement of four genera within the Leotiomycetes (Ascomycota)}, journal = {North American Fungi}, volume = {6}, year = {2011}, pages = {1-13}, doi = {10.2509/naf2011.006.009}, url = {http://openjournals.wsu.edu/index.php/pnwfungi/article/view/1100}, author = {Hustad, V. and Miller, A.N.} } @article {4407, title = {Taxonomy and molecular phylogeny of Diatrypaceae (Ascomycota, Xylariales) species from the Brazilian semi-arid region, including four new species}, journal = {Mycological Progress}, volume = {15}, year = {2016}, pages = {15: 53}, issn = {1617-416X}, doi = {10.1007/s11557-016-1194-8}, url = {http://link.springer.com/10.1007/s11557-016-1194-8}, author = {de Almeida, D.A. Carneiro and Gusm{\~a}o, L.F. Pascholati and Miller, A.N.} } @article {4148, title = {A class-wide phylogenetic assessment of Dothideomycetes}, journal = {Studies in Mycology}, volume = {64}, year = {2009}, pages = {1-15}, issn = {01660616}, doi = {10.3114/sim.2009.64.01}, url = {http://linkinghub.elsevier.com/retrieve/pii/S0166061614600956}, author = {Schoch, C.L. and Crous, P.W. and Groenewald, J.Z. and Boehm, E.W.A. and Burgess, T.I. and de Gruyter, J. and de Hoog, G.S. and Dixon, L.J. and Grube, M. and Gueidan, C. and Harada, Y. and Hatakeyama, S. and Hirayama, K. and Hosoya, T. and Huhndorf, S.M. and Hyde, K.D. and Jones, E.B.G. and Kohlmeyer, J. and Kruys, {\r A}. and Li, Y.M. and L{\"u}cking, R. and Lumbsch, H.T. and Marvanov{\'a}, L. and Mbatchou, J.S. and McVay, A.H. and Miller, A.N. and Mugambi, G.K. and Muggia, L. and Nelsen, M.P. and Nelson, P. and Owensby, C.A. and Phillips, A.J.L. and Phongpaichit, S. and Pointing, S.B. and Pujade-Renaud, V. and Raja, H.A. and Plata, E. Rivas and Robbertse, B. and Ruibal, C. and Sakayaroj, J. and Sano, T. and Selbmann, L. and Shearer, C.A. and Shirouzu, T. and Slippers, B. and Suetrong, S. and Tanaka, K. and Volkmann-Kohlmeyer, B. and Wingfield, M.J. and Wood, A.R. and Woudenberg, J.H.C. and Yonezawa, H. and Zhang, Y. and Spatafora, J.W.} } @article {4074, title = {Coprophilous contributions to the phylogeny of Lasiosphaeriaceae and allied taxa within Sordariales (Ascomycota, Fungi)}, journal = {Fungal Diversity}, volume = {70}, year = {2015}, pages = {101-113}, issn = {1560-2745}, doi = {10.1007/s13225-014-0296-3}, url = {http://link.springer.com/10.1007/s13225-014-0296-3}, author = {Kruys, {\r A}. and Huhndorf, S.M. and Miller, A.N.} } @article {3945, title = {Generic circumscriptions in Geoglossomycetes}, journal = {Persoonia}, volume = {31}, year = {2013}, pages = {101-111}, issn = {00315850}, doi = {10.3767/003158513X671235}, url = {http://openurl.ingenta.com/content/xref?genre=article\&issn=0031-5850\&volume=31\&issue=1\&spage=101}, author = {Hustad, V.P. and Miller, A.N. and Dentinger, B.T.M. and Cannon, P.F.} } @article {3318, title = {Amplistroma gen. nov. and its relation to Wallrothiella, two genera with globose ascospores and acrodontium-like anamorphs}, journal = {Mycologia}, volume = {101}, year = {2009}, pages = {904-919}, issn = {0027-5514}, doi = {10.3852/08-213}, url = {http://www.mycologia.org/cgi/doi/10.3852/08-213}, author = {Huhndorf, S.M. and Miller, A.N. and Greif, M. and Samuels, G.J.} } @article {3234, title = {Geoglossum simile of North America and Europe: distribution of a widespread earth tongue species and designation of an epitype}, journal = {Mycological Progress}, volume = {13}, year = {2014}, pages = {857-866}, issn = {1617-416X}, doi = {10.1007/s11557-014-0969-z}, url = {http://link.springer.com/10.1007/s11557-014-0969-z}, author = {Hustad, V.P. and Ku{\v c}era, V. and Ryb{\'a}rikov{\'a}, N. and Lizo{\v n}, P. and Gaisler, J. and Baroni, T.J. and Miller, A.N.} } @article {2969, title = {Three new species of Acanthostigma (Tubeufiaceae, Dothideomycetes) from Great Smoky Mountains National Park}, journal = {Mycologia}, volume = {102}, year = {2010}, pages = {574-587}, issn = {0027-5514}, doi = {10.3852/09-051}, url = {http://www.mycologia.org/cgi/doi/10.3852/09-051}, author = {Promputtha, I. and Miller, A.N.} } @article {2826, title = {Molecular systematics of the Coronophorales and new species of Bertia, Lasiobertia and Nitschkia}, journal = {Mycological Research}, volume = {108}, year = {2004}, pages = {1384-1398}, issn = {09537562}, doi = {10.1017/S0953756204001273}, url = {http://linkinghub.elsevier.com/retrieve/pii/S0953756208604736}, author = {Huhndorf, S.M. and Miller, A.N. and Fern{\'a}ndez, F.A.} } @article {2803, title = {Phylogenetic relationships of five uncommon species of Lasiosphaeria and three new species in the Helminthosphaeriaceae (Sordariomycetes)}, journal = {Mycologia}, volume = {106}, year = {2014}, pages = {505-524}, issn = {0027-5514}, doi = {10.3852/13-223}, url = {http://www.mycologia.org/cgi/doi/10.3852/13-223}, author = {Miller, A.N. and Huhndorf, S.M. and Fournier, J.} } @article {2443, title = {A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species}, journal = {Studies in Mycology}, volume = {64}, year = {2009}, pages = {49-83}, issn = {0166-0616}, doi = {10.3114/sim.2009.64.03}, author = {Boehm, E.W.A. and Mugambi, G.K. and Miller, A.N. and Huhndorf, S.M. and Marincowitz, S. and Spatafora, J.W. and Schoch, C.L.} } @article {558, title = {Systematics of the genus Chaetosphaeria and its allied genera: morphological and phylogenetic diversity in north temperate and neotropical taxa}, journal = {Mycologia}, volume = {98}, year = {2006}, pages = {121-130}, doi = {10.3852/mycologia.98.1.121}, author = {Fern{\'a}ndez, F.A. and Miller, A.N. and Huhndorf, S.M. and Lutzoni, F.M. and Zoller, S.} } @article {525, title = {Molecular systematics of the Coronophorales and new species of Bertia, Lasiobertia and Nitschkia}, journal = {Mycological Research}, volume = {108}, year = {2004}, pages = {1384-1398}, author = {Huhndorf, S.M. and Miller, A.N. and Fern{\'a}ndez, F.A.} } @article {444, title = {A re-evaluation of genus Chaetomidium based on molecular and morphological characters}, journal = {Mycologia}, volume = {101}, year = {2009}, pages = {554-564}, doi = {10.3852/08-200}, author = {Greif, M.D. and Stchigel, A.M. and Miller, A.N. and Huhndorf, S.M.} } @article {190, title = {Two new genera in the Magnaporthaceae, a new addition to Ceratosphaeria and two new species of Lentomitella}, journal = {Mycologia}, volume = {100}, year = {2008}, pages = {940-955}, doi = {10.3852/08-037}, author = {Huhndorf, S.M. and Greif, M. and Mugambi, G.K. and Miller, A.N.} } @article {122, title = {Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi)}, journal = {Molecular Phylogenetics and Evolution}, volume = {35}, year = {2005}, pages = {60-75}, author = {Miller, A.N. and Huhndorf, S.M.} } @article {121, title = {Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined}, journal = {Mycologia}, volume = {96}, year = {2004}, pages = {368-387}, author = {Huhndorf, S.M. and Miller, A.N. and Fern{\'a}ndez, F.A.} } @article {76, title = {A class-wide phylogenetic assessment of Dothideomycetes}, journal = {Studies in Mycology}, volume = {64}, year = {2009}, pages = {1-15}, doi = {10.3114/sim.2009.64.01}, author = {Schoch, C.L. and Crous, P.W. and Groenewald, J.Z. and Boehm, E.W.A. and Burgess, T.I. and de Gruyter, J. and de Hoog, G.S. and Dixon, L.J. and Grube, M. and Gueidan, C. and Harada, Y. and Hatakeyama, S. and Hirayama, K. and Hosoya, T. and Huhndorf, S.M. and Hyde, K.D. and Jones, E.B.G. and Kohlmeyer, J. and Kruys, {\r A}. and Li, Y.M. and L{\"u}cking, R. and Lumbsch, H.T. and Marvanov{\'a}, L. and Mbatchou, J.S. and McVay, A.H. and Miller, A.N. and Mugambi, G.K. and Muggia, L. and Nelsen, M.P. and Nelson, P. and Owensby, C.A. and Philips, A.J.L. and Phongpaichit, S. and Pointing, S.B. and Pujade-Renaud, V. and Raja, H.A. and Rivas Plata, E. and Robbertse, B. and Ruibal, C. and Sakayaroj, J. and Sano, T. and Selbmann, L. and Shearer, C.A. and Shirouzu, T. and Slippers, B. and Suetrong, S. and Tanaka, K. and Volkmann-Kohlmeyer, B. and Wingfield, M.J. and Wood, A.R. and Woudenberg, J.H.C. and Yonezawa, H. and Zhang, Y. and Spatafora, J.W.} }