@article {4798, title = {Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence}, journal = {Taxon}, volume = {59}, year = {2010}, pages = {1735-1753}, url = {http://www.jstor.org/stable/41059870}, author = {Crespo, A. and Kauff, F. and Divakar, P.K. and del Prado, R. and P{\'e}rez-Ortega, S. and Amo de Paz, G. and Ferencova, Z. and Blanco, O. and Roca-Valiente, B. and N{\'u}{\~n}ez-Zapata, J. and Cubas, P. and Arg{\"u}ello, A. and Elix, J.A. and Esslinger, T.L. and Hawksworth, D.L. and Millanes, A.M. and Molina, M. Carmen and Wedin, M. and Ahti, T. and Aptroot, A. and Barreno, E. and Bungartz, F. and Calvelo, S. and Candan, M. and Cole, M. and Ertz, D. and Goffinet, B. and Lindblom, L. and L{\"u}cking, R. and Lutzoni, F. and Mattsson, J.-E. and Messuti, M.I. and Miadlikowska, J. and Piercey-Normore, M.D. and Rico, V.J. and Sipman, H.J.M. and Schmitt, I. and Spribille, T. and Thell, A. and Thor, G. and Upreti, D. and Lumbsch, H.T.} } @article {4768, title = {A new circumscription of the genus Varicellaria (Pertusariales, Ascomycota)}, journal = {MycoKeys}, volume = {4}, year = {2012}, pages = {23-36}, issn = {1314-4057}, doi = {10.3897/mycokeys.4.354510.3897/mycokeys.4.3545.figure110.3897/mycokeys.4.3545.figure2}, url = {http://mycokeys.pensoft.net/articles.php?id=1187}, author = {Schmitt, I. and Otte, J. and Parnmen, S. and Sadowska-De{\'s}, A. and Luecking, R. and Lumbsch, T.} } @article {4688, title = {The sister-group relationships of the largest family~of~lichenized fungi, Parmeliaceae (Lecanorales,~Ascomycota)}, journal = {Fungal Biology}, volume = {117}, year = {2013}, pages = {715-721}, issn = {18786146}, doi = {10.1016/j.funbio.2013.08.001}, url = {http://linkinghub.elsevier.com/retrieve/pii/S1878614613001177}, author = {Singh, G. and Divakar, P.K. and Dal Grande, F. and Otte, J. and Parnmen, S. and Wedin, M. and Crespo, A. and Lumbsch, H.T. and Schmitt, I.} } @article {4645, title = {Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus Protoparmelia (Lecanorales, Ascomycota)}, journal = {PLOS ONE}, volume = {10}, year = {2015}, pages = {e0124625}, doi = {10.1371/journal.pone.0124625}, url = {http://dx.plos.org/10.1371/journal.pone.0124625}, author = {Singh, G. and Dal Grande, F. and Divakar, P.K. and Otte, J. and Leavitt, S.D. and Szczepanska, K. and Crespo, A. and Rico, V.J. and Aptroot, A. and C{\'a}ceres, M.E. da Silva and Lumbsch, H.T. and Schmitt, I.}, editor = {Fontaneto, D.} } @article {4495, title = {Circumscription of the genus Lepra, a recently resurrected genus to accommodate the {\textquotedblleft}Variolaria{\textquotedblright}-group of Pertusaria sensu lato (Pertusariales, Ascomycota)}, journal = {PLoS ONE}, volume = {12}, year = {2017}, pages = {e0180284}, doi = {10.1371/journal.pone.018028410}, url = {http://dx.plos.org/10.1371/journal.pone.0180284}, author = {Wei, X.-l. and Schmitt, I. and Hodkinson, B. and Flakus, A. and Kukwa, M. and Divakar, P.K. and Kirika, P.M. and Otte, J. and Meiser, A. and Lumbsch, H.T.}, editor = {Baruffini, E.} } @article {4454, title = {Using a temporal phylogenetic method to harmonize family- and genus-level classification in the largest clade of lichen-forming fungi}, journal = {Fungal Diversity}, volume = {84}, year = {2017}, pages = {101-117}, issn = {1560-2745}, doi = {10.1007/s13225-017-0379-z}, url = {http://link.springer.com/10.1007/s13225-017-0379-z}, author = {Divakar, P.K. and Crespo, A. and Kraichak, E. and Leavitt, S.D. and Singh, G. and Schmitt, I. and Lumbsch, H.T.} } @article {4186, title = {The phylogenetic placement of Ostropales within Lecanoromycetes (Ascomycota) revisited}, journal = {Mycological Research}, volume = {111}, year = {2007}, pages = {257-267}, abstract = {

Results of molecular studies regarding the phylogenetic placement of the order Ostropales and related taxa within Lecanoromycetes were thus far inconclusive. Some analyses placed the order as sister to the rest of Lecanoromycetes, while others inferred a position nested within Lecanoromycetes. We assembled a data set of 101 species including sequences from nuLSU rDNA, mtSSU rDNA, and the nuclear protein-coding RPB1 for each species to examine the cause of incongruencies in previously published phylogenies. MP, minimum evolution, and Bayesian analyses were performed using the combined three-region data set and the single-gene data sets. The position of Ostropales nested in Lecanoromycetes is confirmed in all single-gene and concatenated analyses, and a placement as sister to the rest of Lecanoromycetes is significantly rejected using two independent methods of alternative topology testing. Acarosporales and related taxa (Acarosporaceae group) are basal in Lecanoromycetes. However, if the these basal taxa are excluded from the analyses, Ostropales appear to be sister to the rest of Lecanoromycetes, suggesting different ingroup rooting as the cause for deviating topologies in previously published phylogenies.

}, keywords = {Ascomycota, Fungal Proteins, Genes, Fungal, Phylogeny, Species Specificity}, issn = {0953-7562}, doi = {10.1016/j.mycres.2007.01.006}, author = {Lumbsch, H.T. and Schmitt, I. and L{\"u}cking, R. and Wiklund, E. and Wedin, M.} } @article {4180, title = {Molecular phylogeny of the Pertusariaceae supports secondary chemistry as an important systematic character set in lichen-forming ascomycetes}, journal = {Molecular Phylogenetics and Evolution}, volume = {33}, year = {2004}, pages = {43-55}, issn = {10557903}, doi = {10.1016/j.ympev.2004.04.014}, url = {http://linkinghub.elsevier.com/retrieve/pii/S1055790304001435}, author = {Schmitt, I. and Lumbsch, H.T.} }